Scaffold Ga0066660_10050179

Overview

Basic Information

• Taxon OID: 3300006800
• Scaffold ID: Ga0066660_10050179
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2719
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: USA: California: Angelo Coastal Reserve
• Coordinates
  • Lat. (^o): 39.7392
  • Long. (^o): -123.6308
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000284	Metagenome / Metatranscriptome	1378	Y
F031686	Metagenome / Metatranscriptome	182	Y
F092814	Metagenome / Metatranscriptome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0066660_100501791	F031686	AGGGGG	MRREIIYQYQKLNSEDQKVFQRWLWVNTVAGAILLAGLIALAVNVPGDKSETTDQHATIHHKLLPPERASILPSR*
Ga0066660_100501792	F000284	AGG	MKTLVAAIALLCLSSTVLAHDIYTDLRDRDGHLCCNGQDCKPVEATVLPDGNYYLPATDETIPAEMATPSPDDRFHHCTYYQTGPIANEFDRWGGPIWGSKPVTRCFFVPMHSS*
Ga0066660_100501793	F092814	GGGGG	MRQIISSVYGALLIAIWIGVMGTVIAVLDSGEPKWLLVVAGFVAATITVTLVQEFVEWRSRFRGSASEASPVKR*