Metagenome / Metatranscriptome Family F092814

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

Select file to download:
Download

Overview

Basic Information
Family ID	F092814
Family Type	Metagenome / Metatranscriptome
Number of Sequences	107
Average Sequence Length	72 residues
Representative Sequence	MRQIISSIYGALLIAIWICVMGIVIAVLDSGEPKWLLVAAGFVAATITVTLVQEFIEWRSRPRKNALEQRSI
Number of Associated Samples	85
Number of Associated Scaffolds	107

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	71.03 %
% of genes near scaffold ends (potentially truncated)	38.32 %
% of genes from short scaffolds (< 2000 bps)	92.52 %
Associated GOLD sequencing projects	80
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.45

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign

Most Common Taxonomy
Group	Bacteria (56.075 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere (24.299 % of family members)
Environment Ontology (ENVO)	Unclassified (37.383 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (51.402 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Select alignment to view:

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 60.00% β-sheet: 0.00% Coil/Unstructured: 40.00%
Feature Viewer

Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.45
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.45
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 107 Family Scaffolds
PF03401	TctC	4.67
PF01979	Amidohydro_1	1.87
PF04545	Sigma70_r4	1.87
PF13408	Zn_ribbon_recom	0.93
PF08734	GYD	0.93
PF07045	DUF1330	0.93
PF13396	PLDc_N	0.93
PF09929	DUF2161	0.93
PF00165	HTH_AraC	0.93
PF13378	MR_MLE_C	0.93
PF13924	Lipocalin_5	0.93
PF13490	zf-HC2	0.93
PF01590	GAF	0.93

COG ID	Name	Functional Category	% Frequency in 107 Family Scaffolds
COG3181	Tripartite-type tricarboxylate transporter, extracytoplasmic receptor component TctC	Energy production and conversion [C]	4.67
COG4274	Uncharacterized conserved protein, contains GYD domain	Function unknown [S]	0.93
COG5470	Uncharacterized conserved protein, DUF1330 family	Function unknown [S]	0.93

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	56.07 %
Unclassified	root	N/A	43.93 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	56.07 %
Unclassified	root	N/A	43.93 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	56.07 %
Unclassified	root	N/A	43.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	43.93 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	31.78 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	18.69 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	43.93 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	31.78 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	15.89 %
Firmicutes	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	43.93 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	31.78 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	11.21 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1.87 %
Sphingomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales	0.93 %
Clostridia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	43.93 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	31.78 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	11.21 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1.87 %
Sphingosinicellaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingosinicellaceae	0.93 %
Eubacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	43.93 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	31.78 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	11.21 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1.87 %
Sphingosinicella	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingosinicellaceae → Sphingosinicella	0.93 %
Eubacteriaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriaceae	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	43.93 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	31.78 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	11.21 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1.87 %
unclassified Sphingosinicella	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingosinicellaceae → Sphingosinicella → unclassified Sphingosinicella	0.93 %
Acetobacterium	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriaceae → Acetobacterium	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	43.93 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	31.78 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	11.21 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1.87 %
Sphingosinicella sp. CPCC 101087	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingosinicellaceae → Sphingosinicella → unclassified Sphingosinicella → Sphingosinicella sp. CPCC 101087	0.93 %
Acetobacterium woodii	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriaceae → Acetobacterium → Acetobacterium woodii	0.93 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000793\|AF_2010_repII_A001DRAFT_10140529	Not Available	502	Open in IMG/M
3300001867\|JGI12627J18819_10043289	All Organisms → cellular organisms → Bacteria → Proteobacteria	1881	Open in IMG/M
3300005174\|Ga0066680_10577691	Not Available	705	Open in IMG/M
3300005187\|Ga0066675_11309557	Not Available	534	Open in IMG/M
3300005332\|Ga0066388_100564781	Not Available	1765	Open in IMG/M
3300005332\|Ga0066388_100945738	Not Available	1433	Open in IMG/M
3300005332\|Ga0066388_101525919	Not Available	1170	Open in IMG/M
3300005434\|Ga0070709_10861137	Not Available	714	Open in IMG/M
3300005435\|Ga0070714_100291999	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1517	Open in IMG/M
3300005435\|Ga0070714_100556657	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1098	Open in IMG/M
3300005435\|Ga0070714_101202215	Not Available	739	Open in IMG/M
3300005435\|Ga0070714_101724644	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	612	Open in IMG/M
3300005435\|Ga0070714_102469490	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	504	Open in IMG/M
3300005436\|Ga0070713_100809362	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	898	Open in IMG/M
3300005436\|Ga0070713_101171665	Not Available	743	Open in IMG/M
3300005437\|Ga0070710_10024276	All Organisms → cellular organisms → Bacteria	3196	Open in IMG/M
3300005439\|Ga0070711_100142191	All Organisms → cellular organisms → Bacteria	1800	Open in IMG/M
3300005439\|Ga0070711_100163093	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1691	Open in IMG/M
3300005457\|Ga0070662_100514075	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1000	Open in IMG/M
3300005467\|Ga0070706_100473755	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1165	Open in IMG/M
3300005471\|Ga0070698_101112574	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriaceae → Acetobacterium → Acetobacterium woodii	738	Open in IMG/M
3300005518\|Ga0070699_100378121	All Organisms → cellular organisms → Bacteria	1278	Open in IMG/M
3300005518\|Ga0070699_101260827	Not Available	678	Open in IMG/M
3300005545\|Ga0070695_101210641	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	621	Open in IMG/M
3300005546\|Ga0070696_101490451	Not Available	579	Open in IMG/M
3300005713\|Ga0066905_101053581	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	720	Open in IMG/M
3300005764\|Ga0066903_103499408	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	846	Open in IMG/M
3300005764\|Ga0066903_108775377	Not Available	513	Open in IMG/M
3300006028\|Ga0070717_10530361	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1065	Open in IMG/M
3300006028\|Ga0070717_10634648	Not Available	969	Open in IMG/M
3300006028\|Ga0070717_11836336	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	547	Open in IMG/M
3300006163\|Ga0070715_10044125	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingosinicellaceae → Sphingosinicella → unclassified Sphingosinicella → Sphingosinicella sp. CPCC 101087	1883	Open in IMG/M
3300006163\|Ga0070715_10403088	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	761	Open in IMG/M
3300006173\|Ga0070716_100173151	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1410	Open in IMG/M
3300006173\|Ga0070716_101616782	Not Available	532	Open in IMG/M
3300006175\|Ga0070712_100014885	Not Available	4999	Open in IMG/M
3300006175\|Ga0070712_100062758	All Organisms → cellular organisms → Bacteria	2628	Open in IMG/M
3300006175\|Ga0070712_101060633	Not Available	702	Open in IMG/M
3300006800\|Ga0066660_10050179	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2719	Open in IMG/M
3300006845\|Ga0075421_100843933	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1050	Open in IMG/M
3300006904\|Ga0075424_100957866	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	913	Open in IMG/M
3300007788\|Ga0099795_10537109	Not Available	549	Open in IMG/M
3300009100\|Ga0075418_10886192	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	964	Open in IMG/M
3300009137\|Ga0066709_103859380	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	544	Open in IMG/M
3300009143\|Ga0099792_10944629	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	573	Open in IMG/M
3300009147\|Ga0114129_10965585	Not Available	1075	Open in IMG/M
3300009147\|Ga0114129_11622420	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	791	Open in IMG/M
3300009156\|Ga0111538_10748069	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1238	Open in IMG/M
3300009162\|Ga0075423_11595910	Not Available	701	Open in IMG/M
3300009162\|Ga0075423_12259601	Not Available	591	Open in IMG/M
3300009553\|Ga0105249_12188152	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	626	Open in IMG/M
3300010046\|Ga0126384_11985758	Not Available	556	Open in IMG/M
3300010366\|Ga0126379_12590485	Not Available	605	Open in IMG/M
3300010371\|Ga0134125_12124312	Not Available	611	Open in IMG/M
3300010396\|Ga0134126_12816884	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	527	Open in IMG/M
3300010398\|Ga0126383_11499909	Not Available	764	Open in IMG/M
3300010400\|Ga0134122_11467946	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	699	Open in IMG/M
3300010403\|Ga0134123_11340924	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	753	Open in IMG/M
3300010999\|Ga0138505_100061528	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	550	Open in IMG/M
3300012200\|Ga0137382_10037818	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2940	Open in IMG/M
3300012200\|Ga0137382_10496188	Not Available	867	Open in IMG/M
3300012202\|Ga0137363_11721129	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	519	Open in IMG/M
3300012203\|Ga0137399_11459381	Not Available	571	Open in IMG/M
3300012208\|Ga0137376_10538933	Not Available	1012	Open in IMG/M
3300012361\|Ga0137360_11115400	Not Available	681	Open in IMG/M
3300012582\|Ga0137358_10214622	Not Available	1312	Open in IMG/M
3300012941\|Ga0162652_100081224	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	563	Open in IMG/M
3300012951\|Ga0164300_10312065	Not Available	827	Open in IMG/M
3300012955\|Ga0164298_10493303	Not Available	816	Open in IMG/M
3300012958\|Ga0164299_11552734	Not Available	519	Open in IMG/M
3300012960\|Ga0164301_10843083	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	705	Open in IMG/M
3300012961\|Ga0164302_11761631	Not Available	521	Open in IMG/M
3300012984\|Ga0164309_10998883	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	689	Open in IMG/M
3300012985\|Ga0164308_10308357	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1260	Open in IMG/M
3300012985\|Ga0164308_11909187	Not Available	554	Open in IMG/M
3300012987\|Ga0164307_11416577	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	586	Open in IMG/M
3300012988\|Ga0164306_11970393	All Organisms → cellular organisms → Bacteria → Proteobacteria	508	Open in IMG/M
3300015374\|Ga0132255_105196228	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	551	Open in IMG/M
3300018433\|Ga0066667_11323683	Not Available	630	Open in IMG/M
3300019890\|Ga0193728_1166267	Not Available	956	Open in IMG/M
3300020579\|Ga0210407_10515459	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	934	Open in IMG/M
3300020580\|Ga0210403_10799551	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	750	Open in IMG/M
3300020581\|Ga0210399_10373069	All Organisms → cellular organisms → Bacteria → Proteobacteria	1191	Open in IMG/M
3300021168\|Ga0210406_10057026	Not Available	3398	Open in IMG/M
3300021403\|Ga0210397_10985220	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	654	Open in IMG/M
3300021405\|Ga0210387_10987420	Not Available	738	Open in IMG/M
3300021432\|Ga0210384_10341778	Not Available	1348	Open in IMG/M
3300021475\|Ga0210392_10071493	Not Available	2205	Open in IMG/M
3300021478\|Ga0210402_10199528	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1838	Open in IMG/M
3300022726\|Ga0242654_10379674	Not Available	538	Open in IMG/M
3300025910\|Ga0207684_10280026	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1438	Open in IMG/M
3300025915\|Ga0207693_10450459	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1006	Open in IMG/M
3300025915\|Ga0207693_10460075	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	994	Open in IMG/M
3300025916\|Ga0207663_10104536	All Organisms → cellular organisms → Bacteria	1909	Open in IMG/M
3300025929\|Ga0207664_10637776	Not Available	957	Open in IMG/M
3300025934\|Ga0207686_11116928	Not Available	643	Open in IMG/M
3300025972\|Ga0207668_11855405	Not Available	544	Open in IMG/M
3300026552\|Ga0209577_10757660	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	544	Open in IMG/M
3300026557\|Ga0179587_10627337	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	708	Open in IMG/M
3300027105\|Ga0207944_1020109	Not Available	579	Open in IMG/M
3300028047\|Ga0209526_10935943	Not Available	524	Open in IMG/M
3300029636\|Ga0222749_10791887	Not Available	519	Open in IMG/M
3300032174\|Ga0307470_10248448	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1173	Open in IMG/M
3300032180\|Ga0307471_101189280	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	927	Open in IMG/M
3300032180\|Ga0307471_103640166	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	545	Open in IMG/M
3300032205\|Ga0307472_100803233	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	860	Open in IMG/M
3300032261\|Ga0306920_100245316	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2673	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	87.85%
Host-Associated	Host-Associated	12.15%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	87.85%
Plants	Host-Associated → Plants	12.15%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	85.98%
Rhizosphere	Host-Associated → Plants → Rhizosphere	11.21%
Agricultural Field	Environmental → Terrestrial → Agricultural Field	1.87%
Rhizoplane	Host-Associated → Plants → Rhizoplane	0.93%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	47.66%
Loam	Environmental → Terrestrial → Soil → Loam	38.32%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	9.35%
Unclassified	Environmental → Terrestrial → Agricultural Field → Unclassified	1.87%
Soil	Host-Associated → Plants → Rhizosphere → Soil	1.87%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.93%

Habitat	Taxonomy	Distribution
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	29.91%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	26.17%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	15.89%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	9.35%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	8.41%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	5.61%
Unclassified	Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified	1.87%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	1.87%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.93%

Habitat	Taxonomy	Distribution
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	24.30%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	10.28%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	10.28%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	9.35%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	7.48%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	5.61%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	5.61%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	3.74%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	3.74%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	3.74%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	2.80%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	2.80%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	1.87%
Soil	Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified → Soil	1.87%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.93%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.93%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.93%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.93%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.93%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.93%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	0.93%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000793	Forest soil microbial communities from Amazon forest - 2010 replicate II A001	Environmental	Open in IMG/M
3300001867	Texas A ecozone_OM1H0_M2 (Combined assembly for Texas A ecozone Site metagenome samples, ASSEMBLY_DATE=20130705)	Environmental	Open in IMG/M
3300005174	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_129	Environmental	Open in IMG/M
3300005187	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_124	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005434	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG	Environmental	Open in IMG/M
3300005435	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG	Environmental	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005437	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG	Environmental	Open in IMG/M
3300005439	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG	Environmental	Open in IMG/M
3300005457	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG	Host-Associated	Open in IMG/M
3300005467	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG	Environmental	Open in IMG/M
3300005471	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG	Environmental	Open in IMG/M
3300005518	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG	Environmental	Open in IMG/M
3300005545	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaG	Environmental	Open in IMG/M
3300005546	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG	Environmental	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006028	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG	Environmental	Open in IMG/M
3300006163	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG	Environmental	Open in IMG/M
3300006173	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG	Environmental	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300006800	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109	Environmental	Open in IMG/M
3300006845	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5	Host-Associated	Open in IMG/M
3300006904	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3	Host-Associated	Open in IMG/M
3300007788	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_2	Environmental	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300009143	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2	Environmental	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300009553	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG	Host-Associated	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010371	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1	Environmental	Open in IMG/M
3300010396	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-2	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300010400	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2	Environmental	Open in IMG/M
3300010403	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3	Environmental	Open in IMG/M
3300010999	Agricultural soil microbial communities from Tamara ranch near Red Deer, Alberta, Canada - d1t3i015	Environmental	Open in IMG/M
3300012200	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_20_16 metaG	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012203	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaG	Environmental	Open in IMG/M
3300012208	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaG	Environmental	Open in IMG/M
3300012361	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG	Environmental	Open in IMG/M
3300012582	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_20_16 metaG	Environmental	Open in IMG/M
3300012941	Agricultural soil microbial communities from Tamara ranch near Red Deer, Alberta, Canada - d1t4i015	Environmental	Open in IMG/M
3300012951	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_226_MG	Environmental	Open in IMG/M
3300012955	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_216_MG	Environmental	Open in IMG/M
3300012958	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_221_MG	Environmental	Open in IMG/M
3300012960	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MG	Environmental	Open in IMG/M
3300012961	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_202_MG	Environmental	Open in IMG/M
3300012984	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_247_MG	Environmental	Open in IMG/M
3300012985	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_246_MG	Environmental	Open in IMG/M
3300012987	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_243_MG	Environmental	Open in IMG/M
3300012988	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_242_MG	Environmental	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300018433	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116	Environmental	Open in IMG/M
3300019890	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1c1	Environmental	Open in IMG/M
3300020579	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M	Environmental	Open in IMG/M
3300020580	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300021168	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-M	Environmental	Open in IMG/M
3300021403	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-O	Environmental	Open in IMG/M
3300021405	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-O	Environmental	Open in IMG/M
3300021432	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M	Environmental	Open in IMG/M
3300021475	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-O	Environmental	Open in IMG/M
3300021478	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M	Environmental	Open in IMG/M
3300022726	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-30-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300025910	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025915	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025916	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300025929	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300025934	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025972	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026552	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109 (SPAdes)	Environmental	Open in IMG/M
3300026557	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal	Environmental	Open in IMG/M
3300027105	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF018 (SPAdes)	Environmental	Open in IMG/M
3300028047	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300029636	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300032174	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
AF_2010_repII_A001DRAFT_101405292	3300000793	Forest Soil	MRQIISSIYGALLITIWICVMGIVIAVLDSGGPKWLLAAAGFVAATITVTFVEEFMEWRSRPRATKNALERRSI*
JGI12627J18819_100432894	3300001867	Forest Soil	MRQIISSVYGAVLIAIWIGVMGTVIAVLDSGEPKWLLVVAGFVATTVTVTLVQEFIEWRSRPRKNALEQRST*
Ga0066680_105776912	3300005174	Soil	MGAIMRQIISSVYGALLIAIWIGVMAIVIAVLDSPEMLIAGGLVAAILTVALAQEFVEWRSRPRTTKSALEQRSI*
Ga0066675_113095571	3300005187	Soil	MRQISSSIDGARLIAIWIGVMEIVIAVLDSGEPKWLLIVAGFVAATITVTLVQEFVEWRS
Ga0066388_1005647813	3300005332	Tropical Forest Soil	MRQIISSVYGALLIAIWICVMGIVIAVLDSGGPNWLLATAGFVAATITVTLVEEFIEWRTRPSTTTSALEQRSI*
Ga0066388_1009457383	3300005332	Tropical Forest Soil	MRQIISSVYGVLLVAIWICVMGIVVAVLDSGGPRWLLAAAGFAAATITVTLVQEFIEWRSRHLGIAD*
Ga0066388_1015259191	3300005332	Tropical Forest Soil	MRQIISSVYGVLLIAIWICVMGIVIAVLDSGEPKWLLVAAGFVAATITVTLIQEFVEWRSRPSTTKSALEQRSI*
Ga0070709_108611371	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	MRQIISSVYGVLLIAIWIGVMGTVIAVLDSGEPKWLLIIAGFVAAIITVTLVQEFVEWRSRPSATKSSLEQRSI*
Ga0070714_1002919992	3300005435	Agricultural Soil	MRQIISSVYGALLISIWICVMGIVVAVLDSGEPKWLLVAAGFVAATITVTLVQELIEWRSRPTKSALERRSI*
Ga0070714_1005566571	3300005435	Agricultural Soil	GSQNRGALMRQIISSIYGALLIAIWICVMGIVIAVLDSGEPKWLLVAAGFVAATITVTLVQEFIEWRSCPRKSALEQRST*
Ga0070714_1012022153	3300005435	Agricultural Soil	LLIAIWIGVMGTVIAVLDSGEPKWLLVVAGFVAATITVTLVQEFTEWRSRRPRKNALEQRST*
Ga0070714_1017246441	3300005435	Agricultural Soil	MRQIISSVYGALLIAIWIGVMGIVVAVLDSPEMLIAGGLVAAILTVALAQEFVEWRSRPRTTKSSLEQRSI*
Ga0070714_1024694902	3300005435	Agricultural Soil	LIAIWICVMGIVIAVLDSGEPKWLLVAAGFVAATITVTLVQEFVEWRSRPSTTKSALEQRSM*
Ga0070713_1008093623	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	SVYGALLIAIWICVMGIVIAVLDSGEPKWLLVAAGFVAATITVTLVQEFVEWRSRPSTTKSALEQRSM*
Ga0070713_1011716651	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	MRQIISSVYGVLLIAIWIGVMGTVIAVLDSGEPKWLLVVAGFVAATITVTLVQEFIEWRSRPRKNALEQRGT*
Ga0070710_100242764	3300005437	Corn, Switchgrass And Miscanthus Rhizosphere	MRQIISSVYGVLLIAIWIGVMGTVIAVLDSGEPKWLLVVAGFVAATITVTLVQEFIEWRSRTRKNALEQRST*
Ga0070711_1001421911	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	MRQIISSVYGVLLIAIWIGVMGTVIAVLDSGEPKWLLVVAGFVAATITVTLVQEFIEWR
Ga0070711_1001630932	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	MRQIISSIYGALLIAIWICVMGIVIAVLDSGEPKWLLVAAGFVAATITVTLVQEFIEWRSCPRKSALEQRST*
Ga0070662_1005140752	3300005457	Corn Rhizosphere	MRQIISSIYGALLIAIWICVMGIVIAVLDSGEPKWLLAAAGFVAATITVTLVQELIEWRSRPSTTKSALEQRSM*
Ga0070706_1004737551	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	MRQIISIIYGVLLIAIWICVMGIVIAVLDSGGPKWLLLAGGFVAAVSTVALVEEFVERHSGPRTTKSSLEQRSI*
Ga0070698_1011125741	3300005471	Corn, Switchgrass And Miscanthus Rhizosphere	FLGAISGSQNREALMRQIISSVYGALLIAIWIGVMGIVVAVLDSPEMLIAGGLVAAILTVALAQEFVEWRSRPRTTKSSLEQRSI*
Ga0070699_1003781213	3300005518	Corn, Switchgrass And Miscanthus Rhizosphere	LLPPHFLGAISGSQNREALMRQIISSVYGALLIAIWIGVMGIVVAVLDSPEMLIAGGLVAAILTVALAQEFVEWRSRPRTTKSSLEQRSI*
Ga0070699_1012608272	3300005518	Corn, Switchgrass And Miscanthus Rhizosphere	MRQIISIIYGVLLIAIWICVMGIVIAVLDSGGPKWLLLAGGFVAAVSTVALVEEFVERHSGPRTTKSSLEQ
Ga0070695_1012106411	3300005545	Corn, Switchgrass And Miscanthus Rhizosphere	MRQIISSVYGALLIAIWIGVMGTVIAVLDSGEPKWLLVVAGFVAATITVTLVQEFIEWRSCPRKSALEQRST*
Ga0070696_1014904511	3300005546	Corn, Switchgrass And Miscanthus Rhizosphere	MRQIISSIYGALLIAIWICVMGIVIAVLDSGEPKWLLAAAGFVAATITVTLVQEFIEWRSCPRKSALEQRST*
Ga0066905_1010535812	3300005713	Tropical Forest Soil	EFLDECSEMRRGYGAGLIAIWICVMGIVIAVLDSGEPKWLLVAAGFVAATITVTLVQEFVEWRSRPRKSALEQRSI*
Ga0066903_1034994081	3300005764	Tropical Forest Soil	MRQIISTIYGALLIAIWICVMGIVTAVFDSGGPKWLLAAAGFAAITIALIEEWRSRLRTKKGASAHDICGSQTPIYE*
Ga0066903_1087753772	3300005764	Tropical Forest Soil	MRQIISSVYGVLLIAIWICVMGIVIAVLDSGEPKWLLVAAGFVAATITVTLVQEFVEWRS
Ga0070717_105303611	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	ALMRQIISSIYGALLIAIWICVMGIVIAVLDSGEPKWLLVAAGFVAATITVTLVQEFIEWRSCPRKSALEQRST*
Ga0070717_106346483	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	MRQIIFSVYGALLIAIWIGVMGTVIAVLDSGEPKWLLVVAGFVAATITVTLVQEFIEWRSRTRKNALEQRST*
Ga0070717_118363362	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	LMRQIISSIYGALLIAIWICVMGIVIAVLDSGEPKWLLAAAGFVAATITVTLVQELIEWRSRPSTTKSALEQRSM*
Ga0070715_100441252	3300006163	Corn, Switchgrass And Miscanthus Rhizosphere	MRQIISSVYGALLIAIWIGVMGTVIAVLDSGEPKWLLVVAGFVAATITVTLVQEFIEWRSRTRKNALEQRST*
Ga0070715_104030881	3300006163	Corn, Switchgrass And Miscanthus Rhizosphere	SQNRGALMRQIISSIYGALLIAIWICVMGIVIAVLDSGEPKWLLAAAGFVAATITVTLVQELIEWRSRPSTTKSALEQRSM*
Ga0070716_1001731514	3300006173	Corn, Switchgrass And Miscanthus Rhizosphere	ALMRQIISSIYGALLIAIWICVMGIVIAVLDSGEPKWLLAAAGFVAATITVTLVQELIEWRSRPSTTKSALEQRSM*
Ga0070716_1016167822	3300006173	Corn, Switchgrass And Miscanthus Rhizosphere	SQNRGALMRQIISSVYGALLISIWICVMGIVVAVLDSGEPKWLLVAAGFVAATITVTLVQELIEWRSRPTKSALERRSI*
Ga0070712_10001488510	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	MRQIVSSVYGALLIAIWICVMGIVIAVLDSGEPKWLLVAAGFVAATITVTLVQEFIEWRSCPRKSALEQRST*
Ga0070712_1000627583	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	MRQIISSVYGALLIAIWIGVMGTVIAVLDSGEPKWLLVVAGFVAATVTVTLVQEFIEWRSGPRKNALEQRST*
Ga0070712_1010606332	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	MRQIIFSVYGAMLIAIWIGVMGTVIAVLDSDEPKWLLVVAGFVAATITVTLVQEFIEWRSRPRKNALEQRST*
Ga0066660_100501793	3300006800	Soil	MRQIISSVYGALLIAIWIGVMGTVIAVLDSGEPKWLLVVAGFVAATITVTLVQEFVEWRSRFRGSASEASPVKR*
Ga0075421_1008439332	3300006845	Populus Rhizosphere	MRQIISSIYGALLIAIWICVMGIVIAVLDSGEPKWLLVAAGFVAATITVTLVQEFIEWRSRPRKNALEQRSI*
Ga0075424_1009578661	3300006904	Populus Rhizosphere	MRQIVSSVYGALLIAIWICVMGIVIAVLDSGEPKWLLVAAGFVAATITVTLVQEFIEWRSRPSTTKGALEQRSM*
Ga0099795_105371091	3300007788	Vadose Zone Soil	MRQIISSVYGALLIAIWIGVMAIVIAVLDSGEPKWLLAAAGFVAATITVTLVEEFIGWRSRPTKSALEQRS
Ga0075418_108861922	3300009100	Populus Rhizosphere	MRQIISSVYGALLIAIWIGVMGTVIAVLDSGEPKWLLVAAGFVAATITVTLVQEFIEWRSCPRKSALEQRST*
Ga0066709_1038593801	3300009137	Grasslands Soil	VVSEGVGMGAIMRQIISSVYGALLIAIWIGVMGTVIAVLDSGEPKWLLIVAGFVAATITVTLVQEFVEWRSRPSATKSSLEQRST*
Ga0099792_109446291	3300009143	Vadose Zone Soil	MRQIISSVYGALLIAIWICVMGIVIAVLDSGEPKWLLVAAGFVGATITVTLVQEFVEWRSRPKQRSI*
Ga0114129_109655852	3300009147	Populus Rhizosphere	MRQIISSVYGALLIAIWIGVMGTVIAVLDSGEPKWLLVVAGFVAATVTVTLVQEFIEWRSRPRKNALEQRST*
Ga0114129_116224201	3300009147	Populus Rhizosphere	MRRIIFSVYGALLIAIWICVMGIVIAVLDSGEPKWLLVAAGFVAATITITLVQEIVEWRSGPRKSALEQRST*
Ga0111538_107480693	3300009156	Populus Rhizosphere	MRQIVSSVYGALLIAIWICVMGIVIAVLDSGEPKWLLVAAGFVAATITVTLVQELIEWRSRPSTTKSALEQRST*
Ga0075423_115959103	3300009162	Populus Rhizosphere	SIYGALLIAIWIGVMAIVIAVLDSGEPKWLLVAAGFVAATITVTLVQEFIEWRSRPRKNALEQRSI*
Ga0075423_122596011	3300009162	Populus Rhizosphere	MRRIIFSVYGALLIAIWICVMGIVNAVLDSGEPKWLLVAAGFVAATITVTLVQEFIEWRSRPRKNA
Ga0105249_121881521	3300009553	Switchgrass Rhizosphere	PHFLSGIQGSQNRGALMRQIISSIYGALLIAIWICVMGIVIAVLDSGEPKWLLVAAGFVAATITVTLVQEFIEWRSCPRKSALEQRST*
Ga0126384_119857581	3300010046	Tropical Forest Soil	MRQIIFSVYGALLIAIWICVMGIVIAVLDSGEPKWLLVAAGFVAATITVTLIQEFVEWRSDPRKSALEQRSI*
Ga0126379_125904853	3300010366	Tropical Forest Soil	MRQIISIIYDVLLIAIWICVMGIVIAVLDSGEPKWLLVAAGFVGATITVTLVQEFIEWRSRHLGIAD*
Ga0134125_121243122	3300010371	Terrestrial Soil	MRQIISSVYGALLIAIWIGVMGTVIAVLDSGEPKWLLVAAGFVAATITVTLVQEFIEWRSRPRKNALEQRGT*
Ga0134126_128168841	3300010396	Terrestrial Soil	SQNRGALMRQIISSIYGALLIAIWICVMGIVIAVLDSGEPKWLLVAAGFVAATITVTLVQEFIEWRSCPRKSALEQRST*
Ga0126383_114999092	3300010398	Tropical Forest Soil	MRQIISSVYGGLLIAIWIGVMGIVIAVLDSGEPKWLLVAAGFVAATITVTLVQEFIEWRARPTKSALERKSI*
Ga0134122_114679461	3300010400	Terrestrial Soil	MRQIVSSVYGALLIAIWICVMGIVIAVLDSGEPKWLLVAAGFVAATITVTLVQEFVEWRSRPSTTKSALEQRSM*
Ga0134123_113409241	3300010403	Terrestrial Soil	MRQIISSVYGVLLIAIWIGVMGIVIAVLDSGEPKWLLVAAGFVAATITVTLVQEFIEWRSCPRKSALEQRST*
Ga0138505_1000615281	3300010999	Soil	MRQIISTIYGALLIAIWIGVMGTVIAVLDSGEPKWLLVAAGFVAATITVTLVQEFVEWRSRPSATKSSLEQRSI*
Ga0137382_100378181	3300012200	Vadose Zone Soil	MRQIISSVYGALLIAIWLCVMGIVIAVLDSGEPTWLLVAAAFVGATITVTLVEEFVGWRSRPSTTKSA
Ga0137382_104961883	3300012200	Vadose Zone Soil	MRQIISSVYGALLIAIWMCVMGIVIAVLDSGEPKWLLVAAGFVAATITVTLVQEFVEWCSGPRKSALEQRST*
Ga0137363_117211291	3300012202	Vadose Zone Soil	MRQIISIIYGVLLIAIWICVMGIVIAVLDSGGPKWLLLAGGFVAAVSTVALVEEFVEWPSGPGTTKSSLEQGSI*
Ga0137399_114593812	3300012203	Vadose Zone Soil	MRQIISSVYGALLIAIWIGVMGTVIAVLDSGEPKWLLVVAGFVAATITVTLVQEFIEWRSRPRKNALEQRST*
Ga0137376_105389332	3300012208	Vadose Zone Soil	MRQIISSVYGALLIAIWLCVMGIVIAVLDSGEPTWLLVAAAFVGATITVTLVEEFIEWRSRPRKSALEQRST*
Ga0137360_111154001	3300012361	Vadose Zone Soil	MRQIISIIYGVLLIAIWICVMGIVIAVLDSGGPKWLLLAGGFVAVVSTVALVEEFLEWHSRPTSPVKRQLLPPTA*
Ga0137358_102146222	3300012582	Vadose Zone Soil	MRQIISSVYGALLIAIWIGVMGTVIAVLDSGEPKWLLVVAGFVAATVTVTLVQEFIEWRSRPSATKSSLEQRST*
Ga0162652_1000812241	3300012941	Soil	MRQIISSIYGALLIVIWICVMGIVIAVLDSGEPKWLLVAAGFVAATITVTLVQEFVEWRSRPSATKSSLEQRSI*
Ga0164300_103120652	3300012951	Soil	SSIYGALLIAIWICVMGIVIAVLDSGEPKWLLAAAGFVAATITVTLVQELIEWRSRPTKSALERRSI*
Ga0164298_104933032	3300012955	Soil	VYGALLIAIWIGVMGTVIAVLDSGEPKWLLVVAGFVAATITVTLVQEFIEWRSRTRKNALEQRST*
Ga0164299_115527341	3300012958	Soil	MRQIISSVYGALLIAIWIGVMGTVIAVLDSGEPKWLLAAVGFVAATLTVTLVQEFVEWRFRPKQRSV*
Ga0164301_108430831	3300012960	Soil	MRQIISSVYGALLIAIWICVMGIVVAVLDSGEPKWLLAAVGFVAATLTVTLVQEFVEWRFRPKQRSV*
Ga0164302_117616312	3300012961	Soil	MRQIISSVYGALLIAIWICVMGIVIAVLDSGEPKWLLVAAGFVAATITVTLVQEFIEWRSRPRKNAL
Ga0164309_109988831	3300012984	Soil	MYGALLIAIWIGVMGTVIAVLDSGEPKWLLVVAGFVAATITVTLVQEFVEWRSRPRKNALEQRNI*
Ga0164308_103083571	3300012985	Soil	MRQIISSVYGALLFSIWIGVMGIVVAVLDSGEPKWLLVAAGFVAATITVTLVQELIEWRSRPSTTKSALEQRSM*
Ga0164308_119091872	3300012985	Soil	KEVRTGGTLMRQIISSVYGALLIAIWICVMGIVVAVLDSGEPKWLLAAVGFVAATLTVTLVQEFVEWRFRPKQRSV*
Ga0164307_114165771	3300012987	Soil	PEWYLSKSEPGALMRQIISSVYGALLISIWICVMGIVVAVLDSGEPKWLLVAAGFVAATITVTLVQELIEWRSRPTKSALEQRSI*
Ga0164306_119703931	3300012988	Soil	MRQIISSIYGALLIAIWICVMGIVVAVLDSGEPKWLLAAVGFVAATLTVTLVQEFVEWRFRPKQRSV*
Ga0132255_1051962282	3300015374	Arabidopsis Rhizosphere	MRQIIFSVYGALLIAIWICVMGIVIAVLDSGEPKWLLVAAGFVAATITVTLVQEFVEWGSRPRKNALEQRSI*
Ga0066667_113236832	3300018433	Grasslands Soil	MRQIISSVYGALLIAIWIGVMGTVIAVLDSGEPKWLLVVAGFVAATITVTLVQEFVEWRSRPRK
Ga0193728_11662672	3300019890	Soil	MRQIISSVYAALLFAIWIGVMGTVIAVLDSGEPKWLLVVAGFVAATITVTLVQEFIDWRSRPSTTKSSLEQRSI
Ga0210407_105154591	3300020579	Soil	MRQIISSVYGALLISIWICVMGIVVAVLDSGEPKWLLVAAGFVAATITVTLVQELIEWRSRPTKSALERRSI
Ga0210403_107995511	3300020580	Soil	MRQIISSVYGALLIAIWICVMGIVVAVLDSGEPKWLLAAVGFVAATLTVTLVQEFVEWRFRPKQRSV
Ga0210399_103730692	3300020581	Soil	MRQIISSVYGALLIAIWIGVMGTVIAVLDSGEPKWLLVVAGFVAATITVTLVQEFIEWRSRPKKNALEQRST
Ga0210406_100570263	3300021168	Soil	MRQIISSVYGALLIAIWIGVMGTVIAVLDSGEPKWLLVVAGFVAATITVTLVQEFIEWRSRPRKNALEQRST
Ga0210397_109852201	3300021403	Soil	MRQIVSSVYGALLIAIWICVMGIVIAVLDSGEPKWLLVAAGFVAATITVTLVQEFVEWRSRPTKSALERRSI
Ga0210387_109874201	3300021405	Soil	RSQNRGALMRQIISSVYGALLIAIWIGVMGTVIAVLDSGEPKWLLVVAGFVAATITVTLVQEFIEWRSRTRKNALEQRST
Ga0210384_103417781	3300021432	Soil	MRQIISSVYGALLIAIWIGVMGTVIAVLDSGEPKWLLVVAGFVAATITVTLVQEFIEWRSRPKKN
Ga0210392_100714932	3300021475	Soil	MRQIISSVYGALLIAIWICVMGIVIAVLDSGEPKWLLVAAGFVAATITVTLVQELIEWRSRPTKSALERRSI
Ga0210402_101995283	3300021478	Soil	MRQIVSSVYGALLIAIWICVMGIVIAVLDSGEPKWLLVAAGFVAATITVTLVQEFVEWRSRPSTTKSALEQRSM
Ga0242654_103796741	3300022726	Soil	LMRQIISSVYGALLISIWICVMGIVVAVLDSGEPKWLLVAAGFVAATITVTLVQELIEWRSRPTKSALERRSI
Ga0207684_102800262	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	MRQIISSVYGALLIAIWIGVMGIVVAVLDSPEMLIAGGLVAAILTVALAQEFVEWRSRPRTTKSSLEQRSI
Ga0207693_104504592	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	MRQIVSSVYGALLIAIWICVMGIVIAVLDSGEPKWLLVAAGFVAATITVTLVQELIEWRSRPSTTKSALEQRSM
Ga0207693_104600753	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	MRQIISSVYGALLIAIWICVMGIVIAVLDSGEPKWLLVAAGFVAATITVTLVQEFIEWRSCPRK
Ga0207663_101045362	3300025916	Corn, Switchgrass And Miscanthus Rhizosphere	MRQIISSVYGVLLIAIWIGVMGTVIAVLDSGEPKWLLVVAGFVAATITVTLVQEFIEWRSRPRKNALEQRGT
Ga0207664_106377762	3300025929	Agricultural Soil	MRQIIFSVYGALLIAIWIGVMGTVIAVLDSGEPKWLLVVAGFVAATITVTLVQEFIEWRSRTRKNALEQRST
Ga0207686_111169282	3300025934	Miscanthus Rhizosphere	MRQIVSSVYGALLIAIWICVMGIVIAVLDSGEPKWLLVAAGFVAATITVTLVQEFIEWRSCPRKSALEQRST
Ga0207668_118554051	3300025972	Switchgrass Rhizosphere	MRQIISSIYGALLIAIWICVMGIVIAVLDSGEPKWLLVAAGFVAATITVTLVQEFVEWRSRSRGSVSEASPVKR
Ga0209577_107576601	3300026552	Soil	NRGALMRQIISSIYGALLIAIWIGVMAIVIAVLDSGEPKWLLAAAGFVAATITVTLVEEFIGWRSRPTKSALEQRSIWS
Ga0179587_106273371	3300026557	Vadose Zone Soil	IISSVYGALLIAIWIGVMGTVIAVLDSGEPKWLLVVAGFVAATLTVTLVQEFVEWRSRPKQRSI
Ga0207944_10201091	3300027105	Forest Soil	MRQIISSVYGALLIAIWICVMGIVVAVLDSGEPKWLLVVAGFVAATITVTLVQEFIEWRSRTRKNALEQRST
Ga0209526_109359432	3300028047	Forest Soil	ISSVYGALLIAIWIGVMGTVIAVLDSGEPKWLLVVAGFVAATITVTLVQEFIEWRSRPRKNALEQTST
Ga0222749_107918872	3300029636	Soil	AISGSQNRGALMRQIVSSVYGALLIAIWICVMGIVIAVLDSGEPKWLLVAAGFVAATITVTLVQEFIEWRSRPRKNALEQRST
Ga0307470_102484484	3300032174	Hardwood Forest Soil	QIISSIYGALLIAIWIGVMGIVVAVLDSGEPKWLLVAAGFVAATITVTLVQELIEWRSRPTKSALERRSI
Ga0307471_1011892801	3300032180	Hardwood Forest Soil	LMRQIISSVYGALLIAIWICVMGIVIAVLDSGEPKWLLVAAGFVAATITVTLVQEFIEWRSRPSTTKGALEQRSM
Ga0307471_1036401661	3300032180	Hardwood Forest Soil	IAIWICVKGIVVAVVDSGGPKWLLTAAGFVAATITVTLVEEFIGWRSRPSATKSSLEQRS
Ga0307472_1008032333	3300032205	Hardwood Forest Soil	VGDGGLLMRQIISSIYGALLIAIWIGVMGIVVAVLDSGEPKWLLVAAGFVAATITVTLVQELIEWRSRPTKSALERRSI
Ga0306920_1002453165	3300032261	Soil	MRQIISIIYGVLMIAVWICVMGIVIAVLDGGDPQMLVAGGFVAAVSTVAVAQEFVEWRSHPRTSHITQSTVD

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F092814

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences