Scaffold Ga0098074_1002415

Overview

Basic Information

• Taxon OID: 3300006790
• Scaffold ID: Ga0098074_1002415
• Source Dataset Name: Marine viral communities from the Gulf of Mexico - 32_GoM_OMZ_CsCl metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8475
• Total Scaffold Genes: 20
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 19 (95.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Atlantic Ocean: Gulf of Mexico
• Coordinates
  • Lat. (^o): 28.867
  • Long. (^o): -90.467
  • Depth (m): 18

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006383	Metagenome	374	Y
F006867	Metagenome / Metatranscriptome	363	Y
F062169	Metagenome / Metatranscriptome	131	N
F069451	Metagenome / Metatranscriptome	124	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0098074_100241511	F062169	AGGAG	MSVQEHIENILNAEGQGALDAWYVAIHEHPQSAMDIHDEVVDHLVANTFLY*
Ga0098074_100241512	F006867	AGGAG	VLYGEELLKSIQKRSRIQPGMLVKLRVGAPVNKLALVVGLSPGCKFSQDYEGAEEHVFYRCEPLDGTPSFVDYVCNMEQVS*
Ga0098074_100241514	F069451	GGAGG	VKPGDLVRIRKTAINEYSIDWFIYLAEKKTPLLLMEKINEQHWKVMRPDGSTCFLSERKITKRLW*
Ga0098074_100241517	F006383	GGAGG	MLIKDKMWKVQQPGTILRARHSARRGQLALVLAKPYSGPRPGNGYPPTQYVKMQILSSGERFEESLTNANNCWDIVSESS*