Scaffold Ga0098054_1022276

Overview

Basic Information

• Taxon OID: 3300006789
• Scaffold ID: Ga0098054_1022276
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 16_ETSP_OMZ_AT15313 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2515
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (100.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -14.51
  • Long. (^o): -76.2
  • Depth (m): 45

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005743	Metagenome / Metatranscriptome	391	Y
F028035	Metagenome / Metatranscriptome	193	N
F046634	Metagenome	151	Y
F080091	Metagenome / Metatranscriptome	115	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0098054_10222765	F028035	AGGA	MITYEVMQRIEGDTEKHSNYELIQYEFPFPENSVLIERDKEMNRILNKPIIITNE*
Ga0098054_10222766	F046634	AGGAG	MTTETFVPYTESKSAEDRIAYVKANPHKYMPKAQYDLVKSLHSKIEALDSKMNEILAKK*
Ga0098054_10222768	F005743	AGGAGG	MTRNLIVYKVDYANRHEDYNTHTGKFVRTKRIVMLSEEVNQTNGYWRNHSRVEKKFNKQMNGKEDSYYDNKYRILRVRKA*L*
Ga0098054_10222769	F080091	GAGG	MTLKLWKLLSVKIKVEDNNGKIHWYDETDCESHNLGIEYDIEDIINKQGGTFDEEEVGK