Scaffold Ga0098054_1015014

Overview

Basic Information

• Taxon OID: 3300006789
• Scaffold ID: Ga0098054_1015014
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 16_ETSP_OMZ_AT15313 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3144
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (77.78%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -14.51
  • Long. (^o): -76.2
  • Depth (m): 45

Associated Families

Family	Category	Number of Sequences	3D Structure?
F049037	Metagenome / Metatranscriptome	147	N
F060975	Metagenome / Metatranscriptome	132	N
F097503	Metagenome / Metatranscriptome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0098054_10150143	F097503	AGGAG	MDGHTRTEMDCTTEAVVLFEDLVEVFERRMIEGCIADKFKCTYNAEKGEFVAEINGKFYVAMTREKK*
Ga0098054_10150144	F060975	AGGAG	MGKTIRRNPVAKNMERFNTPKTIRDRKKDFYRPDSKREFEEAIEDMSFDEDNRKDAIITQYQDDLARSQEDGWPYED*
Ga0098054_10150145	F049037	GGAG	MSESPCDTCHNYWLCMEGSRACPDFKLFYDTGKITHHDRSPNWYIDMPPHTITVRELSERCGFGKETNKLKHWLGLKVYPLIEDPLGFYFLRHIDGTIENTYAGKSSKRLRNAQAACRQVVLEAKIRESTTRTQDHLGGVVQREMGRNVAALRSDEDQGEN*