Scaffold Ga0098054_1006704

Overview

Basic Information

• Taxon OID: 3300006789
• Scaffold ID: Ga0098054_1006704
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 16_ETSP_OMZ_AT15313 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4946
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia → Candidatus Marinimicrobia bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -14.51
  • Long. (^o): -76.2
  • Depth (m): 45

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020533	Metagenome / Metatranscriptome	223	N
F044429	Metagenome	154	N
F103900	Metagenome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0098054_100670411	F103900	N/A	MSDHRNQIVLESLYHKYIELGYEDKEAQELAAKEFEENSN*
Ga0098054_10067046	F020533	AGGA	MQDAIMLDQDDLVAEFERKVRDKKIFFEVINPGQPKSKGVDIAAMLEENNKLKSEIEIFKDIIQKSITADASGGFNGQDLG*
Ga0098054_10067049	F044429	GGAG	MSELPPKEDRMPGCEWVLVIKYGDPYTNIPQTTGFGPFPTKEDADNFRAQYYYDQIVIADIVPLNAVLPESATELDIDFIPEGKVVDISSKINPNKH*