Scaffold Ga0098054_1006078

Overview

Basic Information

• Taxon OID: 3300006789
• Scaffold ID: Ga0098054_1006078
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 16_ETSP_OMZ_AT15313 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5232
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -14.51
  • Long. (^o): -76.2
  • Depth (m): 45

Associated Families

Family	Category	Number of Sequences	3D Structure?
F041138	Metagenome	160	Y
F067636	Metagenome	125	N
F091864	Metagenome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0098054_100607812	F041138	AGGAGG	MFRDLNEEETEQFQQYARENLPGRADWSGFHPVCRAVWWDLACQHDGLDPKSSFIAFSDDNPYFAEAAQ*
Ga0098054_100607813	F067636	AGGAG	MSLERNYKLTSKQIRFAELVALEGKKLVHAWREAYDTDPDTPMTTARPAASKLAATPRVAEYIQQLRDEAREELIRQNTWSKWDVIARATKHMDGAADAKQWSAVNGALAQIIDLEGLSATRKVEVSGNIEVSHYAQLSMEQLEELAKRADAL
Ga0098054_10060789	F091864	AGGAGG	MTKKKVGGSGAILKDNHGHDECNGECKGAIHVIYQRRGGVSET*