Scaffold Ga0079222_10017991

Overview

Basic Information

• Taxon OID: 3300006755
• Scaffold ID: Ga0079222_10017991
• Source Dataset Name: Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2767
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil → Agricultural Soil Microbial Communities From Utah And Georgia To Study Nitrogen Management

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 33.8834
  • Long. (^o): -83.4195

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011793	Metagenome	287	Y
F064615	Metagenome	128	Y
F065662	Metagenome	127	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0079222_100179912	F011793	GGAGG	MSNWRKFAKRSTVLFCVLLTVFAVAIVARSQVRYPGPESRENNRSMDEYDRTLNRMKNDAKAASERRRSLFPQINEDFQRLQVIHNEIVRMLQPDKGLNYDRLADLTGDMKKRGARLRENLALPEPDKTHAEPAHAETIDEAHIKKTIADLHDVVVSFIANPIFKNIGVVEPKTIDAATKDLNNLMDLSDELKREAKTLGKSAKK*
Ga0079222_100179914	F065662	N/A	MAISNELSSDVAVAILAQKKSPQELKQLKDIILQVHSALQKMSEEVRSERLKKMPQKVQKAQN*
Ga0079222_100179915	F064615	N/A	VVRDSEDARNEKAVGECEDHINRMRLEVGLPVRVDYFFSRTYLKADSNFNARYVRLSFERQAKRYWLVWDSTTVGGLIGDSQRALVR*