Scaffold Ga0098044_1079284

Overview

Basic Information

• Taxon OID: 3300006754
• Scaffold ID: Ga0098044_1079284
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 10_ETSP_OMZ_AT15264 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1363
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → unclassified viruses → Circular genetic element sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -14.205
  • Long. (^o): -77.515
  • Depth (m): 78

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014012	Metagenome	266	Y
F086342	Metagenome	111	Y
F087023	Metagenome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0098044_10792841	F087023	N/A	QDIYVTHEDTVGSQPCNYYIELELIKLDLNENTVATLKDIRNIESQ*
Ga0098044_10792843	F014012	AGG	MVKDKFTFGSTSRMREVPPGQHAELIFSGSMKTIETEWGEKCSFEVTLFKHPSYESIPKAGIETVWESKSVCATQLLTAASQGLDDLTKALKEKWKLIRSEEGTYFIEQI*
Ga0098044_10792844	F086342	AGG	MAYTMKDVFYLDTSIETTTSAGDGIATLDLSSYVDPIARGKSKGQGLAIYKVYWDAMDDGDNAPVPAGSTGAFRAGLISFSGLPSAAVGGASLSNNILRPSNDLMISGFDFDAGGTAAGDPSPHVWLEPSPEVPYIVVRDQVNLMIDVDTAMSNSALVSCRMECAI