Scaffold Ga0098039_1067056

Overview

Basic Information

• Taxon OID: 3300006753
• Scaffold ID: Ga0098039_1067056
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 6_ETSP_OMZ_AT15160 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1245
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -11.499
  • Long. (^o): -81.405
  • Depth (m): 210

Associated Families

Family	Category	Number of Sequences	3D Structure?
F049037	Metagenome / Metatranscriptome	147	N
F060975	Metagenome / Metatranscriptome	132	N
F097503	Metagenome / Metatranscriptome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0098039_10670562	F049037	GGAG	MTESPCDTCHNYWLCMEGSRACPDFKLFYDTGKITHHDRSPNWYIDLPPYTITVRELSERCGFGKETNKLKHWLGLKVYQLIEDPLGFYFLRHLDGGIEDLHEGKSSKRLRYAKAACSQVVLEAKARESTTRSQNHLGRVVQREMGRNVAALRSDEDPGES*
Ga0098039_10670563	F060975	AGGAG	MGKTIRRNPVARNSEKFNKPKTIRDRKKDFYRPDSKREFEEAIEDMGFDEHNRKDAIITQYQDDLARSQEDGWPYED*
Ga0098039_10670564	F097503	AGGAG	MDGHTRTEMDCTTEAIVLFEEIVEVFEHRMIEGCIANEFKCTYNEEKGEFVAEINGKFYVAMTREKK*