Scaffold Ga0098039_1027980

Overview

Basic Information

• Taxon OID: 3300006753
• Scaffold ID: Ga0098039_1027980
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 6_ETSP_OMZ_AT15160 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2009
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales → unclassified Cytophagales → Cytophagales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -11.499
  • Long. (^o): -81.405
  • Depth (m): 210

Associated Families

Family	Category	Number of Sequences	3D Structure?
F094397	Metagenome	106	Y
F099891	Metagenome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0098039_10279802	F094397	N/A	MKKRKNIDGNFRGWEDIFFIKVKKGLKKFLESPFKGGKK*
Ga0098039_10279803	F099891	N/A	MDKAKAEKIKQKVNLAKNENEINFVQEQGKALGLAVDNMKPMELNEPVFEGEPLLLKKGGKYRIDEQYFALMFLEAFQNEDKVTGDLVPLFNRVEQMIGIPKSTLRDWWAKKEEIMSQRTTVLQQGLNYISTAMMMEMMRMTQAMATIDYSELVSGKPQDMHNFISLFNTLINKFRLMNNQSTSNVAHQHEVELVIPD*