Scaffold Ga0098039_1020440

Overview

Basic Information

• Taxon OID: 3300006753
• Scaffold ID: Ga0098039_1020440
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 6_ETSP_OMZ_AT15160 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2387
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -11.499
  • Long. (^o): -81.405
  • Depth (m): 210

Associated Families

Family	Category	Number of Sequences	3D Structure?
F034345	Metagenome / Metatranscriptome	175	Y
F072757	Metagenome / Metatranscriptome	121	Y
F087760	Metagenome / Metatranscriptome	110	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0098039_10204401	F072757	N/A	MKNSLKKIHMPVDDAYIMGKIPELKSKVNATIDKVKTIRYLCEESIAQLEELKEEMTKL*
Ga0098039_10204402	F087760	AGGAG	MSETEILKRNVRELQEQLQNSHIRIKKLRAKLMQYEKLLNMLRKKP*
Ga0098039_10204403	F034345	AGGA	MTEDEELDEFQNKLWELIRETSPPDESKSDILMVSGALLSACLKLYVQTIGKESTIGMFNVAIQSVKDTDDKRVLH*