Basic Information | |
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Taxon OID | 3300006752 Open in IMG/M |
Scaffold ID | Ga0098048_1037226 Open in IMG/M |
Source Dataset Name | Marine viral communities from the Subarctic Pacific Ocean - 13_ETSP_OMZ_AT15268 metaG |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 1565 |
Total Scaffold Genes | 6 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 6 (100.00%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico |
Source Dataset Sampling Location | ||||||||
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Location Name | Pacific Ocean | |||||||
Coordinates | Lat. (o) | -14.509 | Long. (o) | -76.198 | Alt. (m) | Depth (m) | 48 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F021865 | Metagenome / Metatranscriptome | 217 | Y |
F037681 | Metagenome / Metatranscriptome | 167 | N |
F099122 | Metagenome / Metatranscriptome | 103 | N |
Protein ID | Family | RBS | Sequence |
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Ga0098048_10372261 | F021865 | GGAGG | MRCRCCDALLNEWESKAKDPADRTKYLDLCSVCRHHSNPYSFLDDDEVIKKEDINVDIG* |
Ga0098048_10372262 | F099122 | AGGAG | MHKKPLISRLAQVYEDTKLLYFVTDGEGNCMLDNVTQTDAYIYAMKNGWSVGRHDVSPVTDYEPNPDLPFYNDDGTAITYENKDELSEDDFSTYGGM* |
Ga0098048_10372266 | F037681 | AGGAGG | MTEQEEMKNDAIYEEERERRAGITDKMEVKREDLYKSWGYDIEKLPFGAHMWLEPEKGTRQNPYSGVIVELDPVEMAIYDHTMMSYHDHIELGTGGDYAEARKLYKDFNKGKNWFIENNVRAYMDLID* |
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