Scaffold Ga0098048_1014567

Overview

Basic Information

• Taxon OID: 3300006752
• Scaffold ID: Ga0098048_1014567
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 13_ETSP_OMZ_AT15268 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2709
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (70.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -14.509
  • Long. (^o): -76.198
  • Depth (m): 48

Associated Families

Family	Category	Number of Sequences	3D Structure?
F049233	Metagenome / Metatranscriptome	147	N
F059362	Metagenome / Metatranscriptome	134	Y
F080496	Metagenome / Metatranscriptome	115	N
F087020	Metagenome / Metatranscriptome	110	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0098048_10145674	F080496	N/A	VPHKGDNMETWEKDLNENMESIRNSYESIMKTGYSIMGVMILWIGIEIGMLL*
Ga0098048_10145675	F059362	AGGA	MIKTGDPFLVDDKTRLRRTADIEGNIGKIIRVGTMNDTEFDYDIGSLISINDVSLVIRSLIDGDIKAYDLNCTNSGLYKGTITV*
Ga0098048_10145676	F049233	AGGA	VIKITEKKVLGDIGEKIVGNYMSRIGRTVEMSTDPFDSEKDMIVNGKSLEVKTQVPFCLDKSFTIKRNQLNKCLNADYFVIVQAPCQYLNESAIWKVKKGFTYNTVKLKGGGERIAIPMNQPNVIKKMDIVGEDKELLRKYSTDFGG*
Ga0098048_10145679	F087020	N/A	MSYAEWVERYKGKQIDEVTLEDHKVYLKQFKSWQIGNIERV*