Scaffold Ga0098048_1000600

Overview

Basic Information

• Taxon OID: 3300006752
• Scaffold ID: Ga0098048_1000600
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 13_ETSP_OMZ_AT15268 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 16995
• Total Scaffold Genes: 43
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (27.91%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -14.509
  • Long. (^o): -76.198
  • Depth (m): 48

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020156	Metagenome / Metatranscriptome	225	Y
F042280	Metagenome / Metatranscriptome	158	Y
F091852	Metagenome / Metatranscriptome	107	N
F092065	Metagenome / Metatranscriptome	107	Y
F099289	Metagenome / Metatranscriptome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0098048_100060022	F091852	GGA	MRTTKSKMLNLYLELDKCIEKFVQQIIVRGFSKIGDGSYKSVYSKNKLGYVIKIADSLNDEFAELPSDLKNFYIQPYYIDNQIVIQDRANTKQNAQAHKKIHSILGDDRCYDLDIYKQNCGMLKGKPVVFDFALI*
Ga0098048_100060029	F020156	N/A	MLYEELQGLVYNESFKLDYANDILISFDDEIEDGHSEATAYNKAMQDIDNVKNGEWDL*
Ga0098048_100060030	F042280	N/A	MGFMKIKNKWEETFEVNVGDWVGFKSDIEQCGKVKQIQTTRRAMIVENKNGFDGDYIGGDTEALVGFDEVWSEA*
Ga0098048_100060038	F092065	GGAG	MQEIINKIYERMNFLAHAHTNCQATEQAYIAELSCLNEVLDSIEGFPWEESR*
Ga0098048_10006004	F099289	N/A	MITIEDANNEQYFINPINVIYVKKRESFWKILLTNGEAIMTKNTEGAMSIVNAIKKYS*