Scaffold Ga0098048_1000243

Overview

Basic Information

• Taxon OID: 3300006752
• Scaffold ID: Ga0098048_1000243
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 13_ETSP_OMZ_AT15268 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 27961
• Total Scaffold Genes: 37
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (13.51%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 6

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -14.509
  • Long. (^o): -76.198
  • Depth (m): 48

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015734	Metagenome / Metatranscriptome	252	Y
F019756	Metagenome / Metatranscriptome	228	Y
F037986	Metagenome / Metatranscriptome	167	N
F047377	Metagenome / Metatranscriptome	150	Y
F050011	Metagenome	146	N
F074154	Metagenome	120	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0098048_100024315	F050011	N/A	MNVSLEIFSDHIKPYLLQTVAICTDRKIIRKGKLRIFQIKQHYAKLTLEDEVRTRIYEIPYPFEITKQGSKTILCYKLSKLLNFGDLDLQVKFLDSSKKSKIYNENLYIMPLHEVDL*
Ga0098048_100024316	F015734	N/A	MIIQRVALDSLLLKNVCEVRFVRRRPRAGDSPARRMLCTKSYELLNSVNGRVTLNYAPPRGPKKINEAAENVLVVWDILMQDYRTINMNSCDLIQQIPDKDFWEYFNENIYPMSPEQKFNFMNS*
Ga0098048_100024317	F019756	N/A	MAQRSIDTLATQKHLIDLSPNSEGDVGLSDEYELTMIFDDILLVEYVDDNETGEIQRNGIFVPTNALTKAWRRAKVILAGPNAEYTKPGDIVIFPNNLGVTVANIDVNGSTIKRGIFLNEDRLFGICKIKDDNSKSSS*
Ga0098048_100024318	F074154	N/A	MNFFQLQNKLFYSNKSKQPEPLDSEGEQAFVPFLFNRWLTMYSKDTVGFVNETLNKYCGIFDTDKQKTYQMYYNLIPRLKFKRISYIKKVKKDKEKQDETDQLKMIAKNKNMSVRELEIYKNMLD*
Ga0098048_10002436	F037986	N/A	MNKELLPTELQDALTEESVGTIETALKEKVELSVEAALAGQDELYAEKLEALINQIDKDHTVKMQQIVEAVDKNNASKLGNVIKKYETELNESASTFKETLVESISNYIEEYIDEAVPMTSIEEATRNNTALTVLNNLRSTLAVDSSLMAESVKTAIVDGKNEMDELKAEIAELKKTNETLNENYNQAKSAAFLENRCAKFSGKKSAYLKKVLSDKSPRFIEENFEYTARLFDRKEKEQLEVIREEAISNRTVKADAPKTVVEEKAKPSVPSNPYLEGLDLMK*
Ga0098048_10002437	F047377	N/A	MSKETKETSTKDKIIKFIDAISGENYAVANKYLQSAVQDKIESRIRQAAEKPLF*