Scaffold Ga0098048_1000163

Overview

Basic Information

• Taxon OID: 3300006752
• Scaffold ID: Ga0098048_1000163
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 13_ETSP_OMZ_AT15268 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 33600
• Total Scaffold Genes: 41
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 30 (73.17%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -14.509
  • Long. (^o): -76.198
  • Depth (m): 48

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010848	Metagenome / Metatranscriptome	298	Y
F023113	Metagenome / Metatranscriptome	211	Y
F029484	Metagenome / Metatranscriptome	188	Y
F045112	Metagenome / Metatranscriptome	153	Y
F052625	Metagenome / Metatranscriptome	142	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0098048_100016315	F045112	AGG	MREKLDHWKNVCKLHWKEIVTLSIALHWAVDLLILGPLFIALGWFLGVNFGHGH*
Ga0098048_100016336	F052625	GGAGG	MSPEVALLLDAWDTIKSFVPAKERLHVAEELLRSFEDHVDISEAEENANEFDSIMKAALISHFDIGLEDDEDEDWD*
Ga0098048_10001634	F023113	GAG	MPKKNEPEIMPKPYVESGNIEAHIIADMLRIESITAELKEFKEVTKDRLNKLESWIIAIVGLTFTTLMTTVVGLLMKIL*
Ga0098048_10001636	F010848	AGGAG	MAQADRRAAAAGEFIGKDVFLKSFTQQSGNISATQLTALVSSVQNLNLSVLKVGAVSGAAVKMILEGGDNLANGDLAGHVIADVSF*
Ga0098048_10001637	F029484	AGGAG	MAQANPNAAVRAANGLVGTTHIMAVTDVSVKSVADVTAEAQAEGFTVVAIEDDVASDGCHIALQGAGATPSLTGATLVCVFS*