Scaffold Ga0098048_1000006

Overview

Basic Information

• Taxon OID: 3300006752
• Scaffold ID: Ga0098048_1000006
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 13_ETSP_OMZ_AT15268 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 199541
• Total Scaffold Genes: 283
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 212 (74.91%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 8 (88.89%)
• Associated Families: 9

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales (Source: IMG-VR)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -14.509
  • Long. (^o): -76.198
  • Depth (m): 48

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010848	Metagenome / Metatranscriptome	298	Y
F011848	Metagenome / Metatranscriptome	286	Y
F019852	Metagenome / Metatranscriptome	227	Y
F025037	Metagenome / Metatranscriptome	203	N
F029484	Metagenome / Metatranscriptome	188	Y
F033110	Metagenome / Metatranscriptome	178	Y
F043416	Metagenome / Metatranscriptome	156	Y
F070146	Metagenome / Metatranscriptome	123	N
F103350	Metagenome / Metatranscriptome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0098048_1000006105	F103350	GGAG	MATVKKYNLAGLNANVELGKQGSYITGGASEIGFYANGGALQKLKIANATVASEAITKAQLDDVAADLLQHVTVDVDYDSGSANIATVGAGTRVISVTVDVPSAWSATNNTGTYVEVGDSDNQARYIRAQDIDVLKAAQYHSQYQYEYSAEGTLTYDITQGSASAGQATVSIVLASDSVSVTDYGTITQAQNSNSDLGNIS*
Ga0098048_1000006232	F025037	N/A	MGSEQGGVMAISDEMREQLEQVVQYGDQIKAMFAEQDDVDYEIGDYDEPITQLLGHMNEVMESIDGGW*
Ga0098048_1000006239	F033110	GAG	MKTADIKNENGYVVYLYINNDLFGTVDVRNKSIHYAEDVVENWQNGILTEDNQHIKNKKTKLFTS*
Ga0098048_1000006263	F043416	AGGAG	MKRLAEWLQICKVHWKEIFAMSFILHFVTDLLIIGPLFYVLGAVFGLPVEWHGHE*
Ga0098048_100000636	F010848	AGGAG	MAQVDRRAAEAGEFIGKDVFLKSFTQQSGNISATQYTALVSSVQNLNLSVLKVGAVNGAVVNMILEGADNLANGDIAGHVIADISF*
Ga0098048_100000637	F029484	AGGAG	MAQANPNAAVRAANGFVGTTHILEVDDVTAVTVEAACAEAQNEGFVVVAVEGLVSGSHIAVQGAGATPSITGTTVIATFS*
Ga0098048_100000666	F019852	AGGAG	MPIKFKPSQKTFVKGRGTRIEHFYIKNTSTKELIEYINKGQKPKVKQKCRNELDRRGVNLVWVPVTSD*
Ga0098048_100000667	F011848	AGGA	MSNKTPYEIRLDLVREAREILQARAKNPEDMPTTEDVLKEAERLNEFVSKKPNER*
Ga0098048_100000681	F070146	AGGAG	MLSIRILGMQKEPTGLMKGHEIHDFQYRTRDAEAFEKGKELVEEFVAELDFVPSDSEYYVIDDPMQITLGEYEDTGKFPGMNALVLQLEKLGFFAKSMNYRTAEYNPDFARAFNNAVSSPENVEEDGSINWNFVDADLYGSDHRPNSDAEYYKLYDSLAIQYDLANGVIA*