Scaffold Ga0098040_1103553

Overview

Basic Information

• Taxon OID: 3300006751
• Scaffold ID: Ga0098040_1103553
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 7_ETSP_OMZ_AT15161 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 856
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -11.499
  • Long. (^o): -81.405
  • Depth (m): 120

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000563	Metagenome	1022	Y
F000937	Metagenome	828	Y
F077783	Metagenome	117	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0098040_11035531	F000563	N/A	KFKVYEEGKEIEDKEAMSFKKLLKSLVTPNPKWAGWIAYKNKKGKYVRHSILNGKRI*
Ga0098040_11035533	F000937	GAG	MVKEIIIIVLLFNGELKLPSMPFEGTVHECFEYGDQLRIEHATHNEEQNIWFMNDGPGTWQGFICQ*
Ga0098040_11035534	F077783	N/A	YDSWYECSRAAHRESIKIYSKIGYKMVNEARLATRYTCQVDDSI*