Scaffold Ga0098040_1049404

Overview

Basic Information

• Taxon OID: 3300006751
• Scaffold ID: Ga0098040_1049404
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 7_ETSP_OMZ_AT15161 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1310
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → unclassified Candidatus Pelagibacter → Candidatus Pelagibacter sp. TMED64 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -11.499
  • Long. (^o): -81.405
  • Depth (m): 120

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014071	Metagenome / Metatranscriptome	266	Y
F028524	Metagenome / Metatranscriptome	191	Y
F084852	Metagenome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0098040_10494043	F014071	GGTGG	MAKRPGRLIDQTFTSFTEASGRLEDTIGWVTKAKDLAHEFEPGCQAEVTLHLLEEVLEKAGRELDRASTELAMEVFGDK*KT*
Ga0098040_10494044	F084852	GGA	MKDLKRFEEDIQNILDKFEFVGETRRKIFSQLMEYASEQDQFNAEQQAGNPQKGNQNE*
Ga0098040_10494046	F028524	AGG	MTTINNEFETTVKEFVNKLTTIENEMTILRQDRSELFGEMKEKLDPRSFRAAIKIHNLQKSTPDQTSLHRILEVLETGE*