Scaffold Ga0098040_1017319

Overview

Basic Information

• Taxon OID: 3300006751
• Scaffold ID: Ga0098040_1017319
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 7_ETSP_OMZ_AT15161 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2385
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (90.91%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -11.499
  • Long. (^o): -81.405
  • Depth (m): 120

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008590	Metagenome	331	Y
F044592	Metagenome	154	Y
F106118	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0098040_101731910	F008590	GGAGG	MQVGDLVTYSFQLPRWRKGESIHVGLVIETGKYAGNCDCKVLWAGHANPTTESWVHLSLAPGGTK*
Ga0098040_101731911	F106118	GGAGG	MKIGDLVKCMTVDGQPVGLVVERFTAAHSRLDRPKLRPDIFYVLIPGYEDSFPIRTSQMEKINVS*
Ga0098040_10173198	F044592	GGAG	MQIGDLVKYKGILGIVIAPCIKRWAKSGDVYVLWSNRSKPIVECSGFLEVINASR*