Scaffold Ga0098042_1041184

Overview

Basic Information

• Taxon OID: 3300006749
• Scaffold ID: Ga0098042_1041184
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 9_ETSP_OMZ_AT15188 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1277
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -14.198
  • Long. (^o): -77.499
  • Depth (m): 38

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002430	Metagenome / Metatranscriptome	560	Y
F007346	Metagenome / Metatranscriptome	353	Y
F061818	Metagenome / Metatranscriptome	131	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0098042_10411842	F007346	GGAGG	MNDNEIRGIRLSQALKWSGQDIFEVAAAAFEDANYHSFNEVFYAAWMEYQKELENG*
Ga0098042_10411844	F002430	AGGAG	MTLKLPKKQVNAILVALDAEIEMQLGGRPVDWESFPEVAALMMAYYTTRCKFDEDDCRKAWPND*
Ga0098042_10411845	F061818	AGGAG	MTKSQEFWAWIDTCPDGVYVYHDFTDDEDDQKIHVFGFAVPKENDDDDA*