Scaffold Ga0098042_1028971

Overview

Basic Information

• Taxon OID: 3300006749
• Scaffold ID: Ga0098042_1028971
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 9_ETSP_OMZ_AT15188 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1582
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -14.198
  • Long. (^o): -77.499
  • Depth (m): 38

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012114	Metagenome	283	Y
F019646	Metagenome	228	Y
F040582	Metagenome	161	Y
F103053	Metagenome / Metatranscriptome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0098042_10289712	F012114	GGAG	MSNNNCVVYPRKHVWAVYDMDGQKIGEVGAMTEIEARQKVTQHVMIPFRLSHIEE*
Ga0098042_10289713	F019646	N/A	MSNNFEITYTSDCCGAYVHSDAELCPTCLEHCEVIEDRVDYDCSEAVHFEASLDFYGAG*
Ga0098042_10289715	F040582	GGAGG	MGLIDLDFQSIVIGYMVGVALMWSLCNTFYGENNEQRTETDSKNTRPRYDRRYHMLYGDSPE*
Ga0098042_10289717	F103053	N/A	NVLDKFDTPRLQCYLLACQEEKELDGVSVAANILRLRFIQGE*