Basic Information | |
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Taxon OID | 3300006738 Open in IMG/M |
Scaffold ID | Ga0098035_1000194 Open in IMG/M |
Source Dataset Name | Marine viral communities from the Subarctic Pacific Ocean - 3_ETSP_OMZ_AT15126 metaG |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 32284 |
Total Scaffold Genes | 76 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 64 (84.21%) |
Novel Protein Genes | 9 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 7 (77.78%) |
Associated Families | 9 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico |
Source Dataset Sampling Location | ||||||||
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Location Name | Pacific Ocean | |||||||
Coordinates | Lat. (o) | -13.003 | Long. (o) | -80.809 | Alt. (m) | Depth (m) | 135 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F005620 | Metagenome | 395 | Y |
F018814 | Metagenome | 233 | Y |
F022282 | Metagenome | 215 | Y |
F026408 | Metagenome / Metatranscriptome | 198 | Y |
F028524 | Metagenome / Metatranscriptome | 191 | Y |
F048646 | Metagenome | 148 | Y |
F063091 | Metagenome | 130 | Y |
F081210 | Metagenome | 114 | N |
F101067 | Metagenome | 102 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0098035_10001941 | F081210 | N/A | ITELLCRWHKPWRSSVKPGDLVKQAPNIFAARDVGGKKMLVLKVMDGGPNRGETVLTLLEGKERIWHYGELELWRETR* |
Ga0098035_100019430 | F048646 | GGAGG | VLKVLEVFERQARVATERPDGSEYINFEHVYDTRECLLNTNYIVAIHPYEFSSSREIKKTEGRFPEGTKFSTFVLDGNSFRQSEIIVIGSFEKFTQVLGDTAQ* |
Ga0098035_10001944 | F022282 | GAG | MTKFYFRYDLGDLVDFKASRVTEEYIDETMLTGIIIEQRYVFTADNKFKVRTPDGDYWVRCDHLKLISSGTKNKT* |
Ga0098035_100019441 | F005620 | AGGA | MLTDEEINKHIDIFKTFCKNNRLRLREAGDGMPIARAIGKFNEDQFFCNFRTGTIGVFVTRETQRQFTYLHKKLTKLGCVATQLGDFEAAYDLEWMNIPPVARLLKIKKGAAKVRDPKWLRD* |
Ga0098035_100019443 | F028524 | N/A | MTKTNQEFETTVKEFVNKLTTIENEMTILRQDRTELFAEMKSRLDPRSFRAALKIHNLQTSTPDQTSLTRILEVLETCE* |
Ga0098035_100019457 | F018814 | GGAGG | MDSTKSHVKIYNISPEEAEDFEFDYDTETSDILTELVPNLDDWGGLGWMELEEYEYNPHDNTMHLSLETKWASPVQWLQYASKGTHYFENRLITMSTVQKDETCVNGVAIMDGEVLQQKTLFEMESEEVGKYYNEGHPDYNLESLDNQIWDSIGKFVKVCEQFYLEGDKENDY* |
Ga0098035_100019472 | F101067 | GAG | MNPTLDLHGYKHHEVQNAVARFIEDWLGEGVFIDIITGHSEQMAKETVKVIQYYGLEYMTGLPEHSGKIRVVLYNDYH* |
Ga0098035_100019474 | F063091 | AGG | MLYNSLFLLLFSTFFNQTYQLRQIECPRWMPGSNEVLPQGVVLSPALELQNKVRCYCEVVKRKERQCIARHVPASICKERTSVWVADNLSLKNSFRLVNGVAPAPRRDRMMSFEP* |
Ga0098035_100019475 | F026408 | AGGA | LNRRGMTLLIVLVTSTLISLSVTLLISSVNTEVMIAGNNLRIAHAKISAASGLNHFAALNLTYDTLRERAGDVQTLQIIPETQLGQRTSYEVNVHFSPSLSDGRYFVESIGYYKKSGRVISVHPIKALFQGEQ* |
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