Scaffold Ga0098035_1000194

Overview

Basic Information

• Taxon OID: 3300006738
• Scaffold ID: Ga0098035_1000194
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 3_ETSP_OMZ_AT15126 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 32284
• Total Scaffold Genes: 76
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 64 (84.21%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (77.78%)
• Associated Families: 9

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -13.003
  • Long. (^o): -80.809
  • Depth (m): 135

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005620	Metagenome	395	Y
F018814	Metagenome	233	Y
F022282	Metagenome	215	Y
F026408	Metagenome / Metatranscriptome	198	Y
F028524	Metagenome / Metatranscriptome	191	Y
F048646	Metagenome	148	Y
F063091	Metagenome	130	Y
F081210	Metagenome	114	N
F101067	Metagenome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0098035_10001941	F081210	N/A	ITELLCRWHKPWRSSVKPGDLVKQAPNIFAARDVGGKKMLVLKVMDGGPNRGETVLTLLEGKERIWHYGELELWRETR*
Ga0098035_100019430	F048646	GGAGG	VLKVLEVFERQARVATERPDGSEYINFEHVYDTRECLLNTNYIVAIHPYEFSSSREIKKTEGRFPEGTKFSTFVLDGNSFRQSEIIVIGSFEKFTQVLGDTAQ*
Ga0098035_10001944	F022282	GAG	MTKFYFRYDLGDLVDFKASRVTEEYIDETMLTGIIIEQRYVFTADNKFKVRTPDGDYWVRCDHLKLISSGTKNKT*
Ga0098035_100019441	F005620	AGGA	MLTDEEINKHIDIFKTFCKNNRLRLREAGDGMPIARAIGKFNEDQFFCNFRTGTIGVFVTRETQRQFTYLHKKLTKLGCVATQLGDFEAAYDLEWMNIPPVARLLKIKKGAAKVRDPKWLRD*
Ga0098035_100019443	F028524	N/A	MTKTNQEFETTVKEFVNKLTTIENEMTILRQDRTELFAEMKSRLDPRSFRAALKIHNLQTSTPDQTSLTRILEVLETCE*
Ga0098035_100019457	F018814	GGAGG	MDSTKSHVKIYNISPEEAEDFEFDYDTETSDILTELVPNLDDWGGLGWMELEEYEYNPHDNTMHLSLETKWASPVQWLQYASKGTHYFENRLITMSTVQKDETCVNGVAIMDGEVLQQKTLFEMESEEVGKYYNEGHPDYNLESLDNQIWDSIGKFVKVCEQFYLEGDKENDY*
Ga0098035_100019472	F101067	GAG	MNPTLDLHGYKHHEVQNAVARFIEDWLGEGVFIDIITGHSEQMAKETVKVIQYYGLEYMTGLPEHSGKIRVVLYNDYH*
Ga0098035_100019474	F063091	AGG	MLYNSLFLLLFSTFFNQTYQLRQIECPRWMPGSNEVLPQGVVLSPALELQNKVRCYCEVVKRKERQCIARHVPASICKERTSVWVADNLSLKNSFRLVNGVAPAPRRDRMMSFEP*
Ga0098035_100019475	F026408	AGGA	LNRRGMTLLIVLVTSTLISLSVTLLISSVNTEVMIAGNNLRIAHAKISAASGLNHFAALNLTYDTLRERAGDVQTLQIIPETQLGQRTSYEVNVHFSPSLSDGRYFVESIGYYKKSGRVISVHPIKALFQGEQ*