Scaffold Ga0098037_1101128

Overview

Basic Information

• Taxon OID: 3300006737
• Scaffold ID: Ga0098037_1101128
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 5_ETSP_OMZ_AT15132 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 998
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → environmental samples → uncultured marine virus (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -12.999
  • Long. (^o): -80.801
  • Depth (m): 90

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005743	Metagenome / Metatranscriptome	391	Y
F026152	Metagenome	199	Y
F080091	Metagenome / Metatranscriptome	115	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0098037_11011281	F026152	AGGAG	MKLEKKISKTPKFWTAKAWAEHMLHISGFTDAKEVKSVQSNTRGKVSRKSNKSKQSSKAT
Ga0098037_11011282	F080091	GAGG	MSLKLWKLLSVRIKVEDNNGKIHWYDETDCKAHNLGIEYDIEDIINKQGGTFDEDEVGKENK*
Ga0098037_11011283	F005743	AGGAGG	MSRNLIVYKVDYANRHEDYNTRTGKFVRTKRIVMTPDEVNQTGGYWRNHRNVEKKFSKQMNGSDESYWDSKYRVLRVRKA*