Scaffold Ga0098038_1067014

Overview

Basic Information

• Taxon OID: 3300006735
• Scaffold ID: Ga0098038_1067014
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 5B_ETSP_OMZ_AT15132_CsCl metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1275
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -12.999
  • Long. (^o): -80.801
  • Depth (m): 30

Associated Families

Family	Category	Number of Sequences	3D Structure?
F027054	Metagenome / Metatranscriptome	196	N
F049006	Metagenome / Metatranscriptome	147	N
F093905	Metagenome / Metatranscriptome	106	N
F100982	Metagenome / Metatranscriptome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0098038_10670141	F027054	N/A	MTKQKKETSRHWTVELNVGSKRNMGKLRHSKSSGYRYSYHDLNHVRETVVKRFDGGSGNIIKSMFEFTGEYNDEVEKSFYIAFSFYGNVETFKDDDGIEGEYMAFNDRKILEDKLLILCMELEQECIAYNIKEWTSSTFYPTGKQDLIYHPNYDGEQMIFDDE
Ga0098038_10670143	F049006	N/A	MTKMEFIDVCARHGISQWVVMDDLLLSGKQHPHDLTVNDLNEFMWSTY*
Ga0098038_10670144	F093905	N/A	MKHINKKEFNDFYTIMKNNSDKSVMEVYNLYKNLKANNLMPKELLTNKIK*
Ga0098038_10670145	F100982	N/A	MYINFKQIDKLEKVVDSIACSNIETDTFKCLNENQRSYLRNEIIRTLDTMLNLD*