Scaffold Ga0098038_1040827

Overview

Basic Information

• Taxon OID: 3300006735
• Scaffold ID: Ga0098038_1040827
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 5B_ETSP_OMZ_AT15132_CsCl metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1703
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -12.999
  • Long. (^o): -80.801
  • Depth (m): 30

Associated Families

Family	Category	Number of Sequences	3D Structure?
F028800	Metagenome / Metatranscriptome	190	Y
F060424	Metagenome	133	Y
F072335	Metagenome / Metatranscriptome	121	Y
F078595	Metagenome	116	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0098038_10408272	F072335	N/A	MRLNGGLQAHWQDEWILLKRKWNMMQPDERGKWEDYYDTNRK*
Ga0098038_10408275	F060424	N/A	MKRKDILSKIEETYNKIYAFTDRMDDEALEVLDQHTDRYNLADEDAILMEALVDEYDPINLSKDTLSCLLDAYKDALADLRCE*
Ga0098038_10408276	F028800	N/A	MKIEIENGYDGFERHVTGNIDLDGNNVYEWELDTYDGMTSIYLIDCEVRINLEFKDDLNLFNIDEEVAEEIYDEILSFVNNNGYRFIGEGFE*
Ga0098038_10408277	F078595	N/A	MKNKNVIISDFEIVENNLLGINTDKLINKFLELFSSDPDNMCNSKYVNKLNNFLNEINSNYICVNKLSVNDEGEIFWKFKLK*