Scaffold Ga0098038_1011828

Overview

Basic Information

• Taxon OID: 3300006735
• Scaffold ID: Ga0098038_1011828
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 5B_ETSP_OMZ_AT15132_CsCl metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3406
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (84.62%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -12.999
  • Long. (^o): -80.801
  • Depth (m): 30

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014903	Metagenome / Metatranscriptome	259	Y
F050478	Metagenome	145	N
F070149	Metagenome / Metatranscriptome	123	N
F095342	Metagenome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0098038_10118281	F050478	N/A	RTINMKIKRVSRYTFDKDGHPINKRGKRLTNKITATFKHSPNNAGSRVDWIHFEKEEVVK
Ga0098038_10118283	F095342	AGGAG	MNKSEMIAEIESLCKANKNNPYCSIYWLADMIKEVVDSTDLEENEDEDV*
Ga0098038_10118286	F014903	GGAG	MENDITNIRYVEMTYDHTITFDIDEIANANNFIPSDIEEVECGKWAKLNITLKDGRVIEEDGCFYTAIPDLKWAEKEAFYDGSYNELI*
Ga0098038_10118288	F070149	AGGAGG	MSTINEPSIYQIVDEVCARDFEILARLSTNQRNKFVDIIYEDVLAGDSPEDITEDAIYDYVEEFITKAISVSIDDVVDFNL*