Scaffold Ga0098038_1002460

Overview

Basic Information

• Taxon OID: 3300006735
• Scaffold ID: Ga0098038_1002460
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 5B_ETSP_OMZ_AT15132_CsCl metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7894
• Total Scaffold Genes: 24
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (8.33%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -12.999
  • Long. (^o): -80.801
  • Depth (m): 30

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012505	Metagenome / Metatranscriptome	280	Y
F072257	Metagenome / Metatranscriptome	121	Y
F076593	Metagenome / Metatranscriptome	118	N
F092077	Metagenome / Metatranscriptome	107	N
F101482	Metagenome / Metatranscriptome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0098038_100246010	F076593	N/A	MILTEHQKNELDVLADSVAYYIEDHLRETISWQMPDALVEDLQEDQFMDAMDYAYNKVLQLMTE*
Ga0098038_100246013	F012505	GAG	MIYNADEVTFILKKTLDEARQWAIMYCDHSDEIIVRGISDIKYKY*
Ga0098038_100246017	F101482	N/A	MTEEEMQKIVDLIVEELFKRFDAEAKAMNEEFIHELPSNEEQIKELNLLLKYYEKTEDYKRAANVFATIKRLKENI*
Ga0098038_10024607	F072257	N/A	MQELDRVVHQWCNDNDRWMYIEYDRDGKVMGLNFMQGDEYECFKESWCVSDRGLTDFYKQMLYTFAYEQRNVPEHAFINSCMWAYHSAISSRDEYAAPCRRNTHCKR*
Ga0098038_10024608	F092077	N/A	MNKELSPLQRSFERINELIPNSDDVLLRCSLYEMCVELTNKSFVEGINTKY*