Scaffold Ga0098038_1001782

Overview

Basic Information

• Taxon OID: 3300006735
• Scaffold ID: Ga0098038_1001782
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 5B_ETSP_OMZ_AT15132_CsCl metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9293
• Total Scaffold Genes: 22
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 19 (86.36%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (100.00%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -12.999
  • Long. (^o): -80.801
  • Depth (m): 30

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018814	Metagenome	233	Y
F020714	Metagenome	222	Y
F022523	Metagenome	214	Y
F026159	Metagenome	199	Y
F026408	Metagenome / Metatranscriptome	198	Y
F077384	Metagenome	117	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0098038_10017821	F020714	AGGAG	VSNKFNVKSWKQFQMLNEGISDVVYHYTSGLEKGAKILDQNKFLASGGFTKDVESELGKGKLYYFSTARTAANAYTGTYPQGVIFKLDGRALGQKYKGVPLDYWATKKRSSKKAANLDPGETEGFEAEDRILLDEPYIEDADRYIDEIHFAIPLYRFEKGMFDDKPKRKAGSSIEAYQMKGL
Ga0098038_100178210	F022523	AGG	MFKIGDLVEFNYGRVGGQITGIGIFADHGYHGKHKILFMGKAYWVPASCVRTISMVRESAVNAPLDN*
Ga0098038_100178218	F026159	AGGAG	MKKYNLIDIVTTLGIVASILLVLMIVFGSGCSMKFYKQSPADVRKCCERVSLHQKEMDKFTRYCKVALFLANSENTKEVGSGVRKGARDAVNVCKFVFDVTTDKDLLSAGDHQDYYKVRTYIYKDPRNNGGWNPPQCDPAEIHCEEF*
Ga0098038_100178221	F018814	AGGA	MDATKSYIKIHRVNEGEAEDFEYDFDIHSSDLLTELVPDLDNWGDLGWMELEEYEYHAQSQTMNLLIETKWASPTEWLRNASLGSVYFENKLITMATIQKDETCVTGFAAMDGEVLQHKNIFEMESEEVGRYYDDDQPNYDLDHLDNQIWDSIGQFLNVCTQFYQTESEDGNE*
Ga0098038_10017825	F026408	AGGA	LNRRGMALLVVLVMGALIGISAMLLFSTANMEMMIVGNTSRINQAKISAASGLSHFIALDLNYNTLRQRAGDLESIQAIPRTQLGDKTFYEVNVHFCCSLSEGQYIVESTGYYMKGDKIISSKTSRSLFVSSQTN*
Ga0098038_10017829	F077384	GGA	MFQKGDFIVEYKRADRTGGINFGVVMGAEKGFDDMLVLDVVFPRGRLYTFACHCQPYREWLDENSI*