Scaffold Ga0098038_1000857

Overview

Basic Information

• Taxon OID: 3300006735
• Scaffold ID: Ga0098038_1000857
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 5B_ETSP_OMZ_AT15132_CsCl metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 13300
• Total Scaffold Genes: 31
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 22 (70.97%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 8 (88.89%)
• Associated Families: 9

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -12.999
  • Long. (^o): -80.801
  • Depth (m): 30

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001942	Metagenome / Metatranscriptome	613	Y
F002221	Metagenome	581	Y
F006845	Metagenome / Metatranscriptome	363	Y
F007417	Metagenome	351	Y
F008346	Metagenome	335	Y
F008595	Metagenome / Metatranscriptome	331	Y
F012117	Metagenome / Metatranscriptome	283	N
F034894	Metagenome	173	N
F067646	Metagenome	125	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0098038_100085711	F034894	AGGA	MNVRFNLLGGGELNIPPRAISGFYKDQFTSEVIVEVGEDEYKVRDSLDEVKYILGLAR*
Ga0098038_100085718	F067646	AGGA	MVDWILYIIAGIFGLVAIGGLISILAAIYILRELD*
Ga0098038_100085721	F006845	AGG	MKSYEKLMDLNSYLLQEGFEEFCRRAYERISLACEILSIVNDETYEDFRERNYATLESDYLNSIEKTIH*
Ga0098038_100085722	F012117	AGGAG	MDILGGMSNSSNESQQVYLAFKTSHQQFFANGETPVEFQYLQLDPSTFKSGWGRYTKADGFEYHWDDKFGVVAPKPADDYKRAFSAWVFPQGAQHAFLWQRFTFAESSAFNTILGSFWNQMDSSSANLPVVKFEGSKPIQVGMGNSSELSFSFAKFAPRTAEFVIPSWYTEQEAPVDDTFKDPNAGLADKVQEMIDKNELSDDDIPF*
Ga0098038_100085724	F002221	AGGA	MKTYLNESLKDKLKELRLYEVDTRIKWGNRKRIFKMVGVQFEIKFCRAEQMLKDSLQKDAPRKQVQMVEMMLRAYEQLNIKCESSGYIQIQPNAKCFNFDNKTALVCDTDSEKPVLEKIHKDEKDIMIFSIEELFRCIPKDFIRAKELLSKLDKSVNIKRVDYV*
Ga0098038_100085728	F008346	AGGAG	MPIKLKPSAKIRDRATGKTTTEHYYLKCMTLKELNDYIESFSAKKKVILKCKNEIIRREK
Ga0098038_10008573	F008595	AGGAG	MSKEENKMENQEPVIITFNGTEYRAADLNEEQMALAAKLNIAGKKLARLQEAYDDYVITDEYKNLCIQSFDRAINAEEVAEVVEEE*
Ga0098038_10008577	F001942	N/A	MPRKTSDQHQANSRLGALGESLVQTFLLEYADFCFPTQEKHPADLIVEFGNAKYTVQVKSRRATKEKKFVFAAENSRTMSDTYKNYTCDILAFVFFYDDQKRIMFKSNTSSQNYFTFDKKVITDTMELDSLQESLDTLSAVPVLNPII*
Ga0098038_10008579	F007417	GGA	MGRGKFIMTRYTLQVQLPSLGWVVAIKTSDLFYMASKRARLIKEGHKVKLTKESK*