Scaffold Ga0098073_1005816

Overview

Basic Information

• Taxon OID: 3300006734
• Scaffold ID: Ga0098073_1005816
• Source Dataset Name: Marine viral communities from the Gulf of Mexico - 31_GoM_OMZ_CsCl metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2468
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (28.57%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Gulf of Mexico
• Coordinates
  • Lat. (^o): 28.867
  • Long. (^o): -90.467
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001018	Metagenome / Metatranscriptome	804	Y
F002738	Metagenome / Metatranscriptome	533	Y
F013517	Metagenome / Metatranscriptome	270	Y
F073444	Metagenome / Metatranscriptome	120	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0098073_10058163	F073444	AGGA	MIGHQQAVKDFDLQIEMNDLEMNMLHDGDEVMPYNECKVDDLEQKKLKLLYGKRYHQNAANAYWYHLAKAGK*
Ga0098073_10058164	F001018	N/A	MTQITQAKLKELNVLQLYEHYGALERSLPLLTPESQELAKAELETCAHLRSEKIDRIYYAMAAHEDAIERIKKESDLITSAKRHHESQLKSLKGLLNWLRRSLPVDTSKITGRNYQFTLVKKKDLTVEISSDPEFWHTEERTDYCIEEEVTTTKRVVLRSMSGEVLSDRTEPKTTTKVVPNLDAIRSAYQEGRHLPGGVKVSQEYSIRSKRIYGKQSVDLEASEYPGELLPEDRGTD*
Ga0098073_10058165	F013517	N/A	MFETLLDTVLPVMKDLLWAAAGMLLTYMLNKIQSQFN*
Ga0098073_10058166	F002738	N/A	MTIDTYGLTSDQYEEFFEKNIRLAAQLYLKAQNIIFSTGVSNADFKTILDLYSETVYATNDDCRRYQKSNNPEALKEATADIFGITPTREELMAEVQSVNAKVEALTDYIAKLVEGQQG*