Scaffold Ga0098073_1000844

Overview

Basic Information

• Taxon OID: 3300006734
• Scaffold ID: Ga0098073_1000844
• Source Dataset Name: Marine viral communities from the Gulf of Mexico - 31_GoM_OMZ_CsCl metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9457
• Total Scaffold Genes: 20
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (20.00%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 6

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Gulf of Mexico
• Coordinates
  • Lat. (^o): 28.867
  • Long. (^o): -90.467
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001018	Metagenome / Metatranscriptome	804	Y
F002333	Metagenome	569	Y
F002738	Metagenome / Metatranscriptome	533	Y
F013517	Metagenome / Metatranscriptome	270	Y
F025982	Metagenome / Metatranscriptome	199	Y
F043890	Metagenome / Metatranscriptome	155	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0098073_100084411	F043890	N/A	MLKLSSIEKLQIEFIEEPDGTGTINIDWDNTDPDLQWWTDLGTEGQKAFIIDSLYEACVCHVD*
Ga0098073_100084412	F002738	N/A	MSIDTYGLSEEQYQEFFEDNVRFAAELYLQTCNILTTKGVGSVDFKTALDMYQESIYQTNDDCRRYQKANNPEALKDNDIFSISPSREELLTEIQTVNAKVELLSDYINELVQVMERGLTNLVD*
Ga0098073_100084413	F013517	N/A	MFESLLAAVLPVMKDLLWAAAGIAVTYLLNKFQGFYVQTN*
Ga0098073_100084415	F001018	N/A	MSEIQITQVKLKDLNVLKLYEHYDALEKSLPLLTPESQELAKAELEACANLRSEKVDRIYYAMASHEDAIERIKKEADLISSAKRHHESQLKSLKGLLNWLRRSLPFDTNKITGRNYQFTLVKKRELTVEISSDPEFWHTEERAAYCVEEEVTTTKRVVLRSMSGEVLDERTEPKTTTKVIPNLDAIRSAYQEGRQLPSGVKVTQEYSIRSKRVFTGELEVVSPEYPRELLPEDPSTD*
Ga0098073_100084416	F025982	N/A	MSCHEHAIRDFDLQLEMNNLQMEMYMENGQVCPYKVDEYNELEEKKLKLLLGKRFHQNAANAYWYHLQREKLAK*
Ga0098073_10008449	F002333	N/A	MSVLTELNSAQALIYSRTNIRRAFQDFDDTDLAAINLRDDHCVVVYRDGGQRVLPREAIKAAFSSYTHRLKDFFAYLGPNYRGPSVWHNNAYILFKGWTYSHALGHLSPNAKLQAHWADKFIHLSDPAKVTALLQSDQTDLGYLVAPDGMRLPNRPLDLDGELDDVAEANPVFGEPSCSCGSFQRQLGNVSAFQEEIQGFKPWCIHLTWFKKYRELLSKRTEVRNASPSGTPDKCVAWWYAPPSDHVSDGRFVLLHTKSGAQAPLTHWRTYRPTEVFTQKDAWTLFFNMMEAGYTPFPGTSLPQLKNAFKKQ*