Scaffold Ga0098073_1000518

Overview

Basic Information

• Taxon OID: 3300006734
• Scaffold ID: Ga0098073_1000518
• Source Dataset Name: Marine viral communities from the Gulf of Mexico - 31_GoM_OMZ_CsCl metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12963
• Total Scaffold Genes: 24
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (20.83%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (22.22%)
• Associated Families: 9

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Gulf of Mexico
• Coordinates
  • Lat. (^o): 28.867
  • Long. (^o): -90.467
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001018	Metagenome / Metatranscriptome	804	Y
F002333	Metagenome	569	Y
F002738	Metagenome / Metatranscriptome	533	Y
F002985	Metagenome / Metatranscriptome	515	Y
F008128	Metagenome / Metatranscriptome	338	Y
F013517	Metagenome / Metatranscriptome	270	Y
F044444	Metagenome / Metatranscriptome	154	Y
F058089	Metagenome	135	Y
F073444	Metagenome / Metatranscriptome	120	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0098073_100051810	F073444	AGAAG	MNCHQHAVKDFDLQIEMNDLEMEMLKDHGEILPYNEGRVDELEQKKLKLLLGKRFHQNATNAYWYYLAKAGK*
Ga0098073_100051811	F001018	N/A	MSQITQTKLGKLNVFDLYKHYAALEQSLPLLTPESQELAKAELETCANLRSEKIDRIYYAMASHEDALERIKKENDLIVQAKRHHESQLRSLKNLLSYLRRVLPQDSNKITGRNYQFTLVKKKELTIEISSDPEFWHTKERELYCVAEEVTTTKRVVLRSMSGEVLSDRTEPSTKTKILPNIDAIRSAYQNGQQLPTGVKVTQEYSARSKRIYAEPRMELETSEYPGELLPED*
Ga0098073_100051812	F013517	N/A	MFETLLATVLPVMKDLLWAAAGMLLTYMLNKIQSQFN*
Ga0098073_100051813	F002738	N/A	MSIDSYGLSSEQYTEFFHKNVRFAAKLYLDTCNILTTEGVGNIDFKTVLDMYQEAVYTTNDDCRRYQKANNPEALKEATADIFAISPTREELMAEVQSLSAKVDGLTDYFAESLEAKNKGLSGLVD*
Ga0098073_100051815	F044444	N/A	MTDDILEYARQLATQPMKIGHLRYELDIPEDTHWELVKLAADLKMHQEDYAINVLIGHVESELDRKAQD*
Ga0098073_100051816	F002333	N/A	MNTQTQLELNAAQACIYTRTNITRAYQDFDDSEITGIYLRDDNCIVVRRDGTEQTYSRDLIKTAYSSYTHRLKDFFSYLGPNYRGPSVWHNNAYILFKGWNYSHALGHLTSNAQLQNHWADKFIHVSDPAKVTALLQSDQTDIGHLVAPDGMRLPNRAINLDRELDDSAEQEPVSSEPTCSCGSFQRQLNNLSTFQEEVQGFRPWCIHLTWFAKYRELLCKRTEVRNASPSGTPDKCVAWWYAPPTDHTSNGRFVLLHTKSGAQAPLTHWRTYKPKEVFTQHDAWDLFFNMMEAGYTPFPGTSLPQLKSAIKK*
Ga0098073_100051820	F058089	GAGG	MSTQAEDQFTLLFEDGKRKVLHQFQAIGTDEIVDEMIQFLRGIGHLELNIIERMNEISKQYLELYNSNKEVFLELQQDELNDVE*
Ga0098073_100051823	F002985	N/A	MSYVIACWRWGTPHAITANNETNKFELIPLDSDVALNKIFSHPYRAGAQQILTWINSNDEDLACKELSIQDESRFRK*
Ga0098073_10005188	F008128	N/A	MEPVYVPKLTVSFAVDLELEYNSFGGKTADEIAVALQDDLDDLLFELGHVTGVFTSCTSIQFDD*