Scaffold Ga0005504_1296239

Overview

Basic Information

• Taxon OID: 3300006718
• Scaffold ID: Ga0005504_1296239
• Source Dataset Name: Marine microbial communities from the Deep Atlantic Ocean - MP0747 (Metagenome Metatranscriptome)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 521
• Total Scaffold Genes: 1
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas → Pseudomonas syringae group → Pseudomonas cichorii (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location

• Location Name: Atlantic Ocean
• Coordinates
  • Lat. (^o): -32.4846
  • Long. (^o): 12.4609

Associated Families

Family	Category	Number of Sequences	3D Structure?
F030551	Metagenome / Metatranscriptome	185	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0005504_12962391	F030551	N/A	NNGGKRMKNSIRNLIITAALVTGMFGIVNAQTEVSGEFSSDVTVGDATAFSTPYTGLSISGDGWELSTNLSDGDVIVEEAKYNFAISDAITATFGSQAEPYGIAWGSHRPSGNSFVSAPRDHSISTGVGVSTSAYGVGANAFYGDDNYWAARASYDVSAFGINSTIGLSVNSD