Scaffold Ga0031665_1265651

Overview

Basic Information

• Taxon OID: 3300006717
• Scaffold ID: Ga0031665_1265651
• Source Dataset Name: Metatranscriptome of deep ocean microbial communities from Atlantic Ocean - MP0548 (Metagenome Metatranscriptome)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 523
• Total Scaffold Genes: 1
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Archaea → Candidatus Thermoplasmatota → DHVE2 group → Aciduliprofundum → unclassified Aciduliprofundum → Aciduliprofundum sp. MAR08-339 (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location

• Location Name: South Atlantic Ocean
• Coordinates
  • Lat. (^o): -26.95
  • Long. (^o): -21.4

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003864	Metagenome / Metatranscriptome	464	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0031665_12656511	F003864	N/A	LFGALEASKATLAFAPMLSILFVTTRMYALLITDKKGAPQGWVQDGMYMSTWAIAISFMSCLFTGLLMDEVKTDEDGNVINKFSSPAAGFGMQFVRYLSMFLMYGGILTVIYGLFVMTPETANGRGSLPGVGQTPLGDSPPGPGALAKGSF*