3300006717: Metatranscriptome of deep ocean microbial communities from Atlantic Ocean - MP0548 (Metagenome Metatranscriptome)

Overview

Basic Information

• IMG/M Taxon OID: 3300006717
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0053074 | Gp0092399 | Ga0031665
• Sample Name: Metatranscriptome of deep ocean microbial communities from Atlantic Ocean - MP0548 (Metagenome Metatranscriptome)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 109800272
• Sequencing Scaffolds: 31
• Novel Protein Genes: 34
• Associated Families: 33

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia → Candidatus Marinimicrobia bacterium	1
Not Available	21
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Synechococcales → Prochlorococcaceae → Prochlorococcus → Prochlorococcus marinus → Prochlorococcus marinus str. MIT 9201	1
All Organisms → cellular organisms → Bacteria → Spirochaetes → Spirochaetia → Leptospirales → Leptospiraceae → Leptospira → Leptospira yanagawae	1
All Organisms → cellular organisms → Archaea → Candidatus Thermoplasmatota → DHVE2 group → Aciduliprofundum → unclassified Aciduliprofundum → Aciduliprofundum sp. MAR08-339	1
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Deuterostomia → Chordata → Tunicata → Ascidiacea → Phlebobranchia → Cionidae → Ciona → Ciona intestinalis	1
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Chrysophyceae → Chromulinales → Chromulinaceae → Spumella → Spumella elongata	1
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda	1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium MarineAlpha1_Bin1	1
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Saccharomycotina → Saccharomycetes → Saccharomycetales → Debaryomycetaceae → Meyerozyma → Meyerozyma guilliermondii	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Deep Ocean Microbial Communities From The Global Malaspina Expedition
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → marine water body → sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: South Atlantic Ocean
• Coordinates
  • Lat. (^o): -26.95
  • Long. (^o): -21.4
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000183	Metagenome / Metatranscriptome	1709	Y
F001017	Metatranscriptome	804	N
F001271	Metatranscriptome	733	Y
F001583	Metagenome / Metatranscriptome	668	Y
F001707	Metatranscriptome	648	N
F002392	Metatranscriptome	564	Y
F002556	Metagenome / Metatranscriptome	548	Y
F003864	Metagenome / Metatranscriptome	464	Y
F006501	Metagenome / Metatranscriptome	371	N
F008743	Metatranscriptome	328	Y
F011659	Metatranscriptome	288	N
F014024	Metatranscriptome	266	N
F014836	Metagenome / Metatranscriptome	259	Y
F014853	Metatranscriptome	259	Y
F019837	Metagenome / Metatranscriptome	227	Y
F027881	Metagenome / Metatranscriptome	193	Y
F030135	Metagenome / Metatranscriptome	186	Y
F031929	Metagenome / Metatranscriptome	181	Y
F036277	Metagenome / Metatranscriptome	170	Y
F040662	Metatranscriptome	161	Y
F047103	Metagenome / Metatranscriptome	150	Y
F049010	Metatranscriptome	147	Y
F049565	Metatranscriptome	146	N
F057398	Metatranscriptome	136	N
F063613	Metatranscriptome	129	N
F067801	Metatranscriptome	125	Y
F067833	Metagenome / Metatranscriptome	125	Y
F070259	Metagenome / Metatranscriptome	123	Y
F073629	Metatranscriptome	120	Y
F076161	Metagenome / Metatranscriptome	118	N
F078792	Metatranscriptome	116	Y
F090441	Metatranscriptome	108	N
F091895	Metagenome / Metatranscriptome	107	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0031665_1003766	All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia → Candidatus Marinimicrobia bacterium	695
Ga0031665_1004435	Not Available	1073
Ga0031665_1005136	Not Available	647
Ga0031665_1009361	Not Available	668
Ga0031665_1025976	Not Available	526
Ga0031665_1027417	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Synechococcales → Prochlorococcaceae → Prochlorococcus → Prochlorococcus marinus → Prochlorococcus marinus str. MIT 9201	574
Ga0031665_1209318	All Organisms → cellular organisms → Bacteria → Spirochaetes → Spirochaetia → Leptospirales → Leptospiraceae → Leptospira → Leptospira yanagawae	567
Ga0031665_1262886	Not Available	642
Ga0031665_1264936	Not Available	599
Ga0031665_1265651	All Organisms → cellular organisms → Archaea → Candidatus Thermoplasmatota → DHVE2 group → Aciduliprofundum → unclassified Aciduliprofundum → Aciduliprofundum sp. MAR08-339	523
Ga0031665_1269510	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Deuterostomia → Chordata → Tunicata → Ascidiacea → Phlebobranchia → Cionidae → Ciona → Ciona intestinalis	581
Ga0031665_1276531	Not Available	820
Ga0031665_1279036	Not Available	521
Ga0031665_1286534	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Chrysophyceae → Chromulinales → Chromulinaceae → Spumella → Spumella elongata	700
Ga0031665_1288593	Not Available	547
Ga0031665_1291889	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda	684
Ga0031665_1295576	Not Available	772
Ga0031665_1298101	Not Available	503
Ga0031665_1299433	Not Available	583
Ga0031665_1300600	Not Available	553
Ga0031665_1304038	Not Available	711
Ga0031665_1309187	Not Available	572
Ga0031665_1311044	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea	524
Ga0031665_1311698	Not Available	559
Ga0031665_1312488	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium MarineAlpha1_Bin1	966
Ga0031665_1314163	Not Available	844
Ga0031665_1318927	Not Available	739
Ga0031665_1323752	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Saccharomycotina → Saccharomycetes → Saccharomycetales → Debaryomycetaceae → Meyerozyma → Meyerozyma guilliermondii	634
Ga0031665_1327226	Not Available	601
Ga0031665_1330014	Not Available	689
Ga0031665_1334353	Not Available	1670

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0031665_1003766	Ga0031665_10037663	F067833	GIVAMANVFQHHMYVMAQVNSVTQVGVLTVPMVQMKA*
Ga0031665_1004435	Ga0031665_10044351	F027881	IMSLTVARSERVRSVLTHASCTEISINFSSVRVSNIKIVVNKIV*
Ga0031665_1005136	Ga0031665_10051361	F001707	DASKNPNSKAKRELYGFLTMAFGDVDVDKDGKINAQEFDFLCEKVASMPRRFGLAPSWQAEYGGSVEKRTAARKAMFDAIDAKAGTSRGWIGCAQFVDWAFTHVAGKAGTIGATEVDLYHVQNYSEGDLLKTLEVACSDKNSREYAGLYEFLLTLFVEVDEGCKGEISFNEFNGLIERAALVPRTFGLAPPDGTAEERKAIFASMDDTKTGLITF
Ga0031665_1009361	Ga0031665_10093611	F001707	AFAQWCTDASKNPNSKAKRELYGFLTMAFGDVDVDKDGKINAQEFDFLCEKVASMPRRFGLAPSWQAEYGGSVDKRTAARKAMFDAIDAKAGTSRGWIGCAQFVDWAFTHVAGKAGTIGASEVDLYHVQNYTEGDLLKTLEVACSDKNSREYAGLYEFLLTLFVEVDEGCKGEISFNEFNGLIERAALVPRTFGLAPPDGTHEERKAIFASMDDTKTGLITF
Ga0031665_1025976	Ga0031665_10259761	F090441	ATLSFPDSLALGALITRRVIVGCQFPDAVSYRKNDFDTFRSHSGT*
Ga0031665_1027417	Ga0031665_10274172	F036277	LCSNPFVDKTTQYELLSPNKNKIDLSYLGSASLDN*
Ga0031665_1209318	Ga0031665_12093181	F014853	FWFHGSGGNAAHCGSNSKLVEQAEQLGFAYVCGEAVDGQWDIPATITDQTGTPCESSDSSEVGYMQAVLKHLEQSGKYDTKRIFTSGCSMGSAFSGYMGNCLKQWDPTQISAFATHSTGLKYKGDGNRLPENWGECANCQWWPFAPIKYNDSPGLKACIFDNTGDGDFYKTSKYLAQKWPSLGNPSES
Ga0031665_1262886	Ga0031665_12628861	F006501	LAYGNTMIGYWCNKDDQMKACAAATDALAPVVKECNKKQTQFESEFCAMAIVYHAQCQDLNDVCYTETRAAYDSSVASTSKLLGKWKIEYQALKKINCFLDVWLSDGDANTVSSEKLAACKATEADASIMNIDFGTPVKEFVCADAGFGTLPDYPGTPEFVTKEYGAWPDLVQDVIHCHIEDPVAVSTTAGANTPAYR*
Ga0031665_1264936	Ga0031665_12649361	F001017	IHLKYFTMKAVLVLFVVASAFAAPDTRFLCSECVDEMHNLGFLVRAGAHDIRDYLAANYCPTVEANQQDFCIEKLARYYIGMLDAIVHHYFMDGAVHVCQTMGVCDAFRSGRYTCEECVQGLEWVENYIEDPIMIAEYVVYLEQNFCQDDWEGCKEHAIQDFPAMHNMAMEKFFIPTEICNQQEVCGAPPPTKPPQ*
Ga0031665_1265651	Ga0031665_12656511	F003864	LFGALEASKATLAFAPMLSILFVTTRMYALLITDKKGAPQGWVQDGMYMSTWAIAISFMSCLFTGLLMDEVKTDEDGNVINKFSSPAAGFGMQFVRYLSMFLMYGGILTVIYGLFVMTPETANGRGSLPGVGQTPLGDSPPGPGALAKGSF*
Ga0031665_1266006	Ga0031665_12660061	F000183	LMARSKPDELAANGCAPAPTPQQAPSFLQFKAPEDDLAQEMTHDLEMNFNKIAPFGKEDTAKELQDHAAKTQDTLVDAVENAEVAEIKRAVFRALTRLRAATINEFDTIARLETQAIDAYNDAHHYRAENPLTHLHEDEAPVETDKLKSFH*
Ga0031665_1269510	Ga0031665_12695101	F040662	ELTMEMNKNAYLFEELKITLNDQIQLLTNSKARFAMMLSEARSNLAADREEVNAKEQQKLDLEKAYLDFMKKCCERVKWIMFQDMCALIVVRNAVLESSTTCPGQEIVDCDVDNWVGQKCTVDCDDSCPAVPDPTEVYTCGGWQTINRKIVVDPPDECGLRCPALSRTKKCNQRKCPIDCVMSEWSGWSKCTA
Ga0031665_1274498	Ga0031665_12744981	F078792	NKADLEATIQKETSNSDALGAKIDDLSSDIAEDEAELKKATGIRKKENTAFVAQEKELKSVIDMLQRAIAILEKEMGGGASMMQLKSASNLAQALDIMVKASAISTADAGKLTALVQTQSDDADTGAPAAEVYESKSGGIVDTLNGLLEKAEGQLDAATKAETQAKNEYDMKKQALTDEIKYANK
Ga0031665_1276531	Ga0031665_12765311	F047103	AKNGNIWPEMTKNADLGPNLAVFGPKSLIFMGVSKSFGTNITENHLDNLSALFFGQALDQMGQKCRYLAQNASFGPNLAVFGPQIQFFGGRE*
Ga0031665_1279036	Ga0031665_12790361	F067801	CFANMRTLVATALAAYAANADETSLMQDLVKRSATNKLSADAQTSRQDSTAKLLDTAVNMIKNGVTPDVITFVDATNQDINEEVLVAIQSEHDIDQAYINSLCQDFLNAVQALEDQAAAIAVHDNNRLAASEAHHRCRADEAYTCAKSRRCEEQLRQKWITVKHEETVMREIH
Ga0031665_1286534	Ga0031665_12865341	F057398	QSTKLKEEVATLQKELAEIASTQAEMDSLRAEEKATYEETKPELEKAVAGIQSALKVLKDYYAKEASHGASEGAGGGIISLLEVAEADFSKNLSEVLAEEQTAAAAYEAQTKENGMTKLTKESDVKYKTKEAASLDKAVSELSTDLEGVQDELDAVNAAWKTITAQCVAKPETYEERKARREAEINGLKDALEVLESETAFVQVSAKHLRGVRKHA*
Ga0031665_1288593	Ga0031665_12885932	F031929	FGINSTVGLSVNGDDAQLIDVSTDGNASGISYESSFEYDLAAEDESGESSPSYWLRGVVTPDFAKGAYGIIGYNSDEEVTYGIGYNASDNFKVATELSGDGDTVIRFSYSF*
Ga0031665_1291889	Ga0031665_12918891	F001271	ENVDELIERQEKSLVQLDSKRNVVNDLIEKGKKILEHPDKPKFLEGNVKRIQEGWDDTNKKAQDRLKLLQDTKEAWVGYAENNETIASEFEVAEEEIKKVKKRYNLEDALSDLKKRQELYNKSNNTISGLFKAINDNFTCMSITLPEDKKKVLDKEIKAVDAKLEVVTRFKDTVAVVEDFCTALVNFDNSLKAVDGWKDTATAELKDIKEASGAMLPEDRVARTMDLQ
Ga0031665_1295576	Ga0031665_12955761	F049010	EQEPGSVSHTTTENPAINQGLTIDTEPTAADEPMPKGFVPAPFCCEAYGVACGSPGGGIMCSPEPPDCGLLHDKLSLMWGDYKDKVDELTMIMNKNAFEFEELKYTLNDQIKILTNSKARFSMLLSEARSNLAADREEVRAKTEQKEEVEKEYRAFMKLCCERIKWIMFQDMCALIVVRNAVLETSADCP*
Ga0031665_1298101	Ga0031665_12981011	F019837	DVQSLVKTASTHGSGKFDETSMAKARIALNDLVEKAWVELDDKIIECKEYQEMNRATFDQVVTDISRLVEQITDLERVDTESLEGIAKMEMEIKAVEAELSKETKIYNYNFAKNSDELTKRQNDLDVFQFILTFTRCEDATSLLQSNVNETRICAIKGGGHSMCFRD
Ga0031665_1299433	Ga0031665_12994331	F014836	YNGCFCFAEWNDANDVGNWTVNENWLQLMEPSWVHFVSISGDNTVTVDEERRINELYVGPNRWDTTRLVIDEDLTIVYDDVPVISRIQAYRLPTGQVRLIIQGKGFGFVSEDIAVVAEDFYEVDNDSNIDDMEPFTYVCNNPTLTYRDAKIECNLTAANIMPSALKVQVRANGYTTDFVLLSEYVQ*
Ga0031665_1300600	Ga0031665_13006001	F002556	EKEYGNVERRTASRKAMFDMIDLRQGPARNWIGLEQFVRWSFDHVVTKAASIDASAVVDLYHVEQYGETQVLAFLDKAVNDVTSAEHASLYEFLLAVFTEVDSRSAGVLNFKEFDALLSRAAQVPRTFGLAPPDASAEFRKAAFESMEDKAMGGVTFRRLVEWTVEHTKGKISDQKAGKGYKK*
Ga0031665_1304038	Ga0031665_13040381	F073629	PTQEARKDATAKLMETATKMIKAGATPDVIQFINTIITEVNEEVLGAILDEHVRDQELINVLLVRFDDAVSAMEACAASVREQHTDREASSTAHKQCRSLESIACARSRRCEGELEEKWRMVQHEEGEMREIHSAIHGEWCVGPEPPQPDLDDPFVWTESVHSEGDETSLSEIPYPHVAFTDAVIEFRHFSVTQFERYLIQKPRVERAWEEYNAKLIECAAYEETWTLKVDECDGLQ
Ga0031665_1309187	Ga0031665_13091871	F008743	WVGYAENNETIASEFEVAEEEIKKVKKMYNLEAALADMKKRQDLYNKSNNTISGLFKSINDNFTCMSITLPEDKKKVVAKEISAVDAKLEVVGRFKDTVKVIEDFCAALVNFDNSLKAVDGWKDTATAELKDIKEASGAMLPEDRVARTMDLQEDIAAKLEILKKCAETEAALLPQGGNVDKDAQAFKNE
Ga0031665_1311044	Ga0031665_13110441	F001583	SLFNNAYKTYYILFTNKHLNTDQLTRFMIFHYFSPFYYIYLVKLHVLFCHES*DTDSGETTYEDKSGTYVS*FYDAFLKEIQDA*Y*VLYIYVYFFLNNFNGSTVNYFFFER*NIAELDEIRFYGVAPH*YFRPYMGILVISPTHYEGLM*MGLFLGSLAFLPLIYNVYNTFNK
Ga0031665_1311698	Ga0031665_13116981	F091895	APDPAVYENQSGGVLDTLNKLLEEAQGQLDAARNKETSSIQAFEMLKQGLEDAIKFANKEMDEAKQSKSASAEAKATAEGDLDVTSKDLAEDIKTLAELHHNCMTKANDYEAETKSRGEELKALATAKKIIKETTGGAADQSYGLDQESFLQMPEGETRAVRFIRQLAKNQKSPALAQLASRMSS
Ga0031665_1312488	Ga0031665_13124881	F076161	PRNRRAEAHRFMKSINFSSRRPKTGFRAFAEKPVAKSLLLPQFGGQKMPPQGASIPNRLAAWTVPQIAADPKERSNLLSSPTNPDALTGKPVRRLD*
Ga0031665_1314163	Ga0031665_13141631	F002392	VSRSAVRTPAVRAFAAVPSPWGSDAWRYDKNAFQAWASEAVTKKGSAAQRELYGMLAMRFGDTDVDKDGKINAAEFDSLCEDVASLPRRFGLAPSWEKEYGNVERRTASRKAMFDMIDLRQGPARNWIGLEQFVRWAQDHIITKVGTIDASAEVDLYHVEQYGEAQVLAFLDKATSDINSREHASLYEFLLAVFTEVDGRSSGVLTFKEFDALLTRAAQVPRTFGLAPPDASAEFRKAAFEKMEDKAMGGVTFRTLVAWTTEHAKGKIADQKAGKGYKK*
Ga0031665_1318927	Ga0031665_13189271	F030135	NREELATLSSFTDIWHSTFAGCQFPDAILPDKEAFDLVAGPLN*
Ga0031665_1323752	Ga0031665_13237521	F063613	MYFILLTMNLITSLLKKRGGERGSGLLVGLALKGSGGLLALVVGGSTNLSLLLQSLDGILILPSDLVGQTTEASEVAARSESQHTEGLRANHTVDLVVRRGDTLEDLEVSQSGGTTGGLVGDHSTDGSPENLRGSTEVERTTSGVDVASLSKEVLVLELVSEVRTRDVDVLATNNNDLLSGQELLGNSGGKTAQKVTLSVNHDSLLKHAWT
Ga0031665_1327226	Ga0031665_13272261	F014024	FRSFILLEKMLATRSSVRCARAAASPWGAEAWRHDKTAFAQWCTDASKNPNSKAKRELYGFLTMAFGDVDVDKDGKINAQEFDFLCEKVASMPRRFGLAPSWQAEYGGSVEKRTAARKAMFDAIDAKAGTSRGWIGCAQFVDWAFTHVAGKAGSIGATEVDLYHVQNYSEGDLLKTLEVACSDKNSREYAGLYEFLLTLF
Ga0031665_1330014	Ga0031665_13300141	F011659	LQLLRSQHKMARLLLVAALCLASAKAAVIPVEEIVDNLQSFLTAPEESGLRLKRSTGEWDKEFDLSSMGILFQLKYNNPANPFEGGRAHVKVPGARFIRNAPFDDMDLDIEFNGGSAIDGLFDMKVNYKFIQKFMFLADRPQEGSFVLYRKMEGGMWKTKVTVDNNNMMPKPFLDISVESDRKTKLHVLFNFQEDNKWELKVDRVPGQKMTIEVTVNGQKWTGVGNLNQ
Ga0031665_1332584	Ga0031665_13325841	F049565	VVDRGSVVDSMVSGVVDNRDGVGNNLVVLLPAGLSVEGEGDLLAAGLPDDDLLLVNGVGGIDELGNVEALVLNLVLALDLSDGDVLGDADLLGGRVGKAALDSEGSSDKGNLVGLGLVLLMADLVLTMVGVGSVAVGRGLDSTSGDLHGLRLLVIGDLGGLAVSDNIFPLVDIGADLPLDNSVGLLADGEDTVEAVVVVNNLLDRQGDRGHLLGKGGHADLSVNRCVGVPAQKLRSMVDGMGNGMVAGMVDSMMLSTGKCNQGRKNEAPHVDCLK
Ga0031665_1334353	Ga0031665_13343531	F070259	MKLSFMKLESLVIVNHHVTVNDLSNFAHTAHHARRVMLAGHLS*