Scaffold Ga0031689_1173537

Overview

Basic Information

• Taxon OID: 3300006694
• Scaffold ID: Ga0031689_1173537
• Source Dataset Name: Metatranscriptome of deep ocean microbial communities from South Indian Ocean - MP1239 (Metagenome Metatranscriptome)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 563
• Total Scaffold Genes: 1
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location

• Location Name: West of Perth, Australia, South Indian Ocean
• Coordinates
  • Lat. (^o): -31.13
  • Long. (^o): 110.21

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018528	Metatranscriptome	234	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0031689_11735371	F018528	N/A	GNLPSRKMAAMFVVVLLAIATTCQGAALDRMKREAIVGKMDKTFDFLGVHMGLKYKDAAQPLKGGKIQLKVDDLKKIFKGAHSNKVEVDAEFDGGVAVNDGLFKMVAHYSMVHSDGDGEEKGEVLIERKQTGGMWTTTIKTTASPFGGKPLFPAAINNLKIMVESDRQTKFHAMYVNPTKNRDMHIN