3300006694: Metatranscriptome of deep ocean microbial communities from South Indian Ocean - MP1239 (Metagenome Metatranscriptome)

Overview

Basic Information

• IMG/M Taxon OID: 3300006694
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0053074 | Gp0092423 | Ga0031689
• Sample Name: Metatranscriptome of deep ocean microbial communities from South Indian Ocean - MP1239 (Metagenome Metatranscriptome)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 54615677
• Sequencing Scaffolds: 23
• Novel Protein Genes: 31
• Associated Families: 29

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	12
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda	5
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Novosphingobium → Novosphingobium aromaticivorans	1
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Hexapoda → Insecta → Dicondylia → Pterygota → Neoptera → Endopterygota → Coleoptera → Polyphaga → Cucujiformia → Tenebrionoidea → Tenebrionidae → Tenebrionidae incertae sedis → Tribolium → Tribolium castaneum	1
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda → Gymnoplea → Calanoida → Temoridae → Eurytemora → Eurytemora affinis	1
All Organisms → cellular organisms → Eukaryota → Sar	1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Gonyaulacales	1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Deep Ocean Microbial Communities From The Global Malaspina Expedition
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → marine water body → sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: West of Perth, Australia, South Indian Ocean
• Coordinates
  • Lat. (^o): -31.13
  • Long. (^o): 110.21
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000021	Metagenome / Metatranscriptome	6082	Y
F000048	Metagenome / Metatranscriptome	3365	Y
F000049	Metagenome / Metatranscriptome	3277	Y
F000068	Metagenome / Metatranscriptome	2731	Y
F000073	Metagenome / Metatranscriptome	2639	Y
F000685	Metatranscriptome	937	Y
F000879	Metagenome / Metatranscriptome	850	Y
F000981	Metatranscriptome	814	Y
F001583	Metagenome / Metatranscriptome	668	Y
F001833	Metatranscriptome	628	Y
F005448	Metatranscriptome	400	N
F007220	Metatranscriptome	355	N
F012012	Metatranscriptome	284	Y
F013304	Metagenome / Metatranscriptome	272	Y
F014852	Metatranscriptome	259	Y
F016401	Metagenome / Metatranscriptome	247	Y
F018528	Metatranscriptome	234	Y
F023830	Metatranscriptome	208	N
F027881	Metagenome / Metatranscriptome	193	Y
F040651	Metatranscriptome	161	Y
F044435	Metatranscriptome	154	N
F055666	Metatranscriptome	138	Y
F055741	Metagenome / Metatranscriptome	138	N
F059045	Metagenome / Metatranscriptome	134	Y
F088751	Metagenome / Metatranscriptome	109	N
F090278	Metatranscriptome	108	N
F090441	Metatranscriptome	108	N
F099150	Metatranscriptome	103	N
F105006	Metatranscriptome	100	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0031689_1082686	Not Available	511
Ga0031689_1117570	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda	557
Ga0031689_1127159	Not Available	518
Ga0031689_1151166	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda	638
Ga0031689_1162513	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Novosphingobium → Novosphingobium aromaticivorans	587
Ga0031689_1163013	Not Available	615
Ga0031689_1165385	Not Available	644
Ga0031689_1168588	Not Available	572
Ga0031689_1170817	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda	532
Ga0031689_1173537	Not Available	563
Ga0031689_1175148	Not Available	1485
Ga0031689_1178316	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Hexapoda → Insecta → Dicondylia → Pterygota → Neoptera → Endopterygota → Coleoptera → Polyphaga → Cucujiformia → Tenebrionoidea → Tenebrionidae → Tenebrionidae incertae sedis → Tribolium → Tribolium castaneum	818
Ga0031689_1180587	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda	802
Ga0031689_1181738	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda → Gymnoplea → Calanoida → Temoridae → Eurytemora → Eurytemora affinis	561
Ga0031689_1182180	All Organisms → cellular organisms → Eukaryota → Sar	751
Ga0031689_1182419	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Gonyaulacales	774
Ga0031689_1183381	Not Available	712
Ga0031689_1183571	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda	665
Ga0031689_1184697	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea	701
Ga0031689_1184734	Not Available	570
Ga0031689_1188252	Not Available	694
Ga0031689_1189983	Not Available	1182
Ga0031689_1191672	Not Available	528

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0031689_1005399	Ga0031689_10053991	F007220	GEDNTPGVYASVSKGVCWIDYAMTCQFGQQSGSYSSYWGHSAQQCQTWMDVELSRLNQEVADMQNAGSLTGRKKAAALAKGLKAQETLNKYSQCNVFWQPIDAAPLTTGGNGYVDGGDVDISNFERDNYPAAPLTDGTDGYSEPKTVDSAPLTDDSYSETKTVDTAPLTDDSYSETKTVDAAPLTDGSYSEPKTAPQTEGSYEDAPPVKLTQGAYTEDTADLTGEVKAPGPVY*
Ga0031689_1040382	Ga0031689_10403821	F055741	ARGAKFYALMHRFDGFTGELNMGEQSWVKHPVGSQTLVTQTNVKSGEAYQHPDNSWWFAHDATAVGDHGMAWTNGLACDETFKFTAAYCPAVACKMSAKCVQIAPLMPKLLHTTAKAMTQDEIASSNEVRISLYGATTKMDISPKLVPFFGEMRTTVISKPRNAKNYQDHVSRCKIAQKSVMAKGINIDAQQLDDIARFSFFIDFEDQYGADKAMFDGNYVRTLCADPFYKNGSGALQTGTLSL
Ga0031689_1082686	Ga0031689_10826861	F005448	EATGIALKDSFRCGLFFPDPADKSPDKSALPYLNLYIFNATFDAKAECDSGTPNVERYNTFCAEVWDKGGKGLVLTSPSLNKKRAADGISIGDDICNWVKTEGKTPFVGKNSKKFPNGLEFGMYSNSCGNKLWDWAGRIHHEIVCCAKGLHTPCDF*
Ga0031689_1117570	Ga0031689_11175702	F059045	IPKEDVQKLLAELCDPEDEDGMFPYTPFVDRLTGKA*
Ga0031689_1127159	Ga0031689_11271591	F105006	MSMNKFTLLNSNGVARPGFYIEILEFPSGNTPGQAVYVDGRGTDDMINFIYNPETDLLDAWHIRSPDNKFTMTPITVSNRVVGLDVRFTHIPNFVAHFALDLSTDEEEVVYDVLAPPVHLAELTSVNF*
Ga0031689_1151166	Ga0031689_11511661	F000685	LLEVIMELLEAYKEGNQAKVAKAQVDKLIDLAAPPPKGTGVQNIRECIIESKMTFDVSADDWQAYLKAKIMNNIERYFYMIVFAMYIREVGPKGFPQTFKQYMDANSGLRTMIEEGRSKLEWERKIPDEKLAELKDILSSADFKDNMPKVIKRIYELSWDMFGDLPRGHHKNNSMHKLASKTMIEILPENLATYVEKKCGSLAGTPDFFDVT
Ga0031689_1162513	Ga0031689_11625131	F044435	QGQTDELLTWLSKVQQKKATIRSTRARDFRKEALLEAARVSAQTELEKKQRERLQRLRDVRPTICRPPSPPIVERDENLCDCESCFLCQRHRSSMYGKCYCNVIFSPRPIFMDFSPPVLLASEAFAGDEQVSQEADNFLASLGSKRRIDSELGGAVASKRAKA*
Ga0031689_1163013	Ga0031689_11630131	F090278	SLWRSKREASEGLVDVDEDDFYEFLQQVNDNRHFRHNAMGNLTCVLHKCGQLTEDMEVNMDFYTTALRAEEPETGFTWDVEGSAAKDPEWREKIATAYEDCYDLAESWPATSLNRRPMTRMFGRQMIFFKCADRTERRVCTEAQLLENLETFYGSESDEETAERIAAIGLPEDKYDAAAISIAVIQNAQSEEEKFFERFMWNLN
Ga0031689_1163363	Ga0031689_11633631	F000068	TEVEEKCEDETSGYTTNTKCSKWPKEVCSVSKKNVKKYTPITGCTKEPRELCAPAGCGFKQGAEECYDKTQTVVQDAPKEQCSLEPQRTCKHVTKLVPKLSPTEECVDVPKEVCTRSRTNPRKVKKPVVKKWCYVPSEESGLA*
Ga0031689_1165385	Ga0031689_11653851	F000981	IPRRYGLAPLDVGDAVSRAVNHKILFDSLDKTGRGALTLDQFVEWANAHVVSAIPKIPTGDVGLYHVEDYSEEQYIGFVEKAVNNPGSYEHASFYNFILNCFVEADEQCQGRITYDQFDKLLSRAATVPRHFGLAPPESSTEARKKMFDELELKRGGQGTGYVTARTFWEWTVVHVRGMIELQKAGKGWRENH*
Ga0031689_1167634	Ga0031689_11676341	F000073	KKAFSLTGGKVSTPADQLKLNKSFVDYMSEHSKLRTIVDEGKGKLQWERDIPPEALANLESLAASDFKGNLGKIIHDIYQTAHGLFKDLPQGDHKKRAKYRFASKTLMRVLPANLKTEVEGLISSKTMTLDLYEILGQCTWGQAK*
Ga0031689_1168588	Ga0031689_11685881	F023830	PTLRMLKFVALALCLASLSQAAPEPRIACQECMDEMHMLGYIVKQGAAEIEEYLKTNYCPTLDEQFRPQCEQNLADNYVSMLQMIVNHFFVDGAGHICLAWGVCQPKEVAALIGNKQPRPFTCPECLEGMELVGAYMTDPLWISEYTVYLEQNFCVGHNDHHCVDMVQRHFPPMHSMAMAQFFVPQEICD
Ga0031689_1170817	Ga0031689_11708172	F012012	EPEYYGNMAQKFKNGFQYAKYLEVLSLPDDMRELLDEYLDANSRADQNKACEEFFQCPYSIKDSAKRNLSGNNL*
Ga0031689_1173510	Ga0031689_11735101	F000048	AEGLSKPSDLNEVKALNEKVSTFDKTCLTYAKVLDAANGAAQKMTTHGEADAEVAALKERYNKVKAVSDEWVKNVDVLLKEWTLLDNTVTELNSWVAKDKSSEGENQFSLEKMESTLGELKNIFKEKEKLVEGL*
Ga0031689_1173537	Ga0031689_11735371	F018528	GNLPSRKMAAMFVVVLLAIATTCQGAALDRMKREAIVGKMDKTFDFLGVHMGLKYKDAAQPLKGGKIQLKVDDLKKIFKGAHSNKVEVDAEFDGGVAVNDGLFKMVAHYSMVHSDGDGEEKGEVLIERKQTGGMWTTTIKTTASPFGGKPLFPAAINNLKIMVESDRQTKFHAMYVNPTKNRDMHIN
Ga0031689_1175148	Ga0031689_11751482	F001833	MTLDTEMTLSSNSKVYEFLSEKYPYGAFNTRNNKVKLFVNKKNKNLLAPKFKIEVHLEKDGEKVVDLTADTTGSPYVFKLTAPNFFKRWGIKQSSIDITADHKIGSSLVIDANILGGLLLEGKRGDNAKNGRDVSLMVQKGGVQMFKITWSTEKINNANEFRFILHDTLDVNSESMLYKNIISQYKILTPFNSRIGEFEIYVNKKDKNLVLNKFYAKGNVMKDGNKRFDFLLSTNEKPYKFELFAPSLLGKLKPGMTEAKISADHNPGQSLEIKTNFEKFTGLKIYKSGSGNERKVEVNGKELAKGDYTLTDNSFSTKITLGNDYLEPKITWEGKLPNSRQEAEAFMLKNNVDVKVTGSKRNLDLNLNWKMTKPDFDFGTPENGKISMNAKGNNPRWGDYSLSRDINWKAENKVIELNLKGMAQFAKGGLATSTPIETAVNFKVLVDKKDLI*
Ga0031689_1178316	Ga0031689_11783161	F000049	MRHNKMAEWMENVEKAIARIMADKVYTSAEFKRERDTFHALCKDLERTEVKKWLNQILEILMAERAKSQQETENEKLTILIQKHEQLIPTVQKTAVMVDLYWKCYAYGDELKPHIEFLDGIMLSSTREIAPSCVENVDELIERQEKSITQLDSKRGVVTDLITKGKGILEHPDKPKFLEGNVRRIQEGWDDTKTKAQERLKLLIDTKDACVGYAANNETIASEVDVAEAEIKKVKKK
Ga0031689_1180587	Ga0031689_11805871	F000049	PFLQETKKAKNEALCKDLERSDIKKWLVNILEILMAERSKDEKTMQNQKLEALIKKHEDLIPTVSKTQVKVDLYWKCYAFGDELKPHIEFLDGIMLSSTRDIAPSCIENVEELIERQEKSLTQLETKRSIVQDLITKGKQLMENPDKPKFLDGHVGRIKEGWDETKNKASARLELLYNTKAAWEGYATGLETIVVEFEKGEEEIKKVKKRFNLDAAKDDLAKRKGIFNDTKNTIEGMFGDIQHNYDVMTMTLPEEKKDFVKKEVKA
Ga0031689_1181629	Ga0031689_11816291	F000049	ENVEKSIARIMADKVYTSSEFKRERDTFNSLCKDLERAEVRKWLQQILEILMAERAKEQKNTEFGKLDALIKCHEELIPNVQKTAVMVDLYWKCYAYGDDLKPHVEFLDGIMLSSTRDIAPSCLENVDELIERQEKSLSQLDSKRNIVTDLIAKGKVILQNPDKPKFLEANVKRIQDGWEDTKNKATDRLQLLNETKAAFIGYAENSETIATDFETAE
Ga0031689_1181738	Ga0031689_11817381	F000879	MKCLLVCAVLSAVSAVPQVYLGGLHGYPYALGSALTYTPHVIKPVVKEIEIPVKTITYGIKETGCKNSFGFSVPCLAEGEARRKRAADEEAAEAAPAAAVLPYAGLPLAYGYGLGAYGYGLPYTYAAPTVTVGEPKVTEVEVPQYVYKAVNEKVELAPLCHNGLGFAVPCA*
Ga0031689_1182180	Ga0031689_11821801	F016401	PGRFYPCSGVSIVERQGFVQRTLTANGETYLENIYDDEQTSEIVYRKLVNGSETDVERVVVVRTNPLQIEFHMRNKADGFRVEWDMPKSAALSAVDAFVREARRMEGSTPTTIGYGITSDPIRDVTFDHLFAATELAIKEPWRVIEVDQSSCHVQDCAGFLTRKMRLSASGEMVTERITISEEKGEVTYNKCDASGRPSDVERVLAIRTPLRLEFYERSARSGMRVHWTAPYNMARDTFSNIVQLAKKIK
Ga0031689_1182419	Ga0031689_11824191	F040651	GWTSPAVTTCTSDGLWAAMVYKARNPQKFMDVSNVTVADRQGFIARSMTINPTGKRVEEHIYANERTGEMVYRIVDASTKQETDDERVMAVRDGPLRIEFFHRHKSDGYRAYWQAPVDTVQKMIQELIDYASKNDGQGGDVGLGVRSAEIKGVSHDSVWRSMMESIREPARFFPCSGVSIQEKPGYIQRTLTANGETYTENIYDDEASCEIVYRKLSNGAETDLERVVALRTHPLQIEFHLRNKNDGFRVTWSMPKS
Ga0031689_1183381	Ga0031689_11833811	F055666	NAAQFDALCENVAKLPRRFGLAPTWEIEYDGDIAKRTAARQKMFDGIDGMHGPARGWIGCAQFIHWATDHVASKVADAKATGVDFYHVTDYSKQDFLKAIDNAVHDPTSQDHQNFYEFLLTIFVEEDHQCKGVVSKEAFARLVDRAALVPRHFELAPPSADAARVAELYAAMEDSRLGGVTFRKFLQWTTEHTKAKIEAHKQ*
Ga0031689_1183571	Ga0031689_11835711	F013304	EDKKDFVKKEVKAIQDKLEVVSRFKEKVDKIDEFVASLDNFDKTLKMVDSWMKEADNQLNDIKNNSDTMTPEDRVSCTMELQEDVTAKVDIVVAAIKTENDLLPQGDQVPKDAQDFKDELKRINDYVTDLQKRVMTECEHFSEDVKYWAEYKTGIRGFKPWLEASETRTGGGLSKPQTLDEANAMFANVNDFDQGCLKHLTILLNAETAANKMTTHKEADV
Ga0031689_1184228	Ga0031689_11842281	F000021	KNECDKVIDKNGTPKTGGNGIKQLRENIAESKLSYEIMDDAAQAFLKVKIMDNIHKYYYMIAFTAYMREMAEAARGLVSDEQKAALTLPGGKSAIPGNQLKLGKTFVTFMDAQPELRGLIDQGKGNLQWERDIPAAALANLESLANSDFKANLGKIIHDIYQTAHQMFSDMPQGDHKKRAKYRFASKTLMRILPSSVKGEIEGLIEKKAISLDLYEILGKCTWKPV*
Ga0031689_1184697	Ga0031689_11846971	F001583	AESDG*LLGGYAFF*FHYIIALGISLSATHLSDLTLTIIANIF*SVLNFTYKTYYIIFTNKHLNTDQLTRLMVLHYFTP*YYLYLVQLHVMFCHES*DSDSGENVYEDKSGSYVS*FYDAFLKEIQDA*Y*VLYVFCYFTIHHFAPGTVNYFFFER*NISELDEIRFYGVAPH*YFRPLMGLLVVSPSHYEGLM*MGL*FVLLAALPIIYSFYNTHHNYLPIIPMQHSYLQTC
Ga0031689_1184734	Ga0031689_11847341	F099150	MKGAILACVLLGLAASAYAEEFEVADNEARFLYFNTSSTATSLTLLGALILLGVIGYLVYVGGLLGTSSYNRNDYYDPAAYDPAYAQAYQQQAQYRSEESSSPFTAENILKAISMVQEIYEASQS*
Ga0031689_1188252	Ga0031689_11882521	F090441	LALGALITRRVIVGRQFPDAVLYRKNDSDTFRFHSGT*
Ga0031689_1188317	Ga0031689_11883171	F014852	LALLPLALALPAREKKQAGYGYAPAPYHPAPAYPAHYGYGYEQPKHNCSVIDVVEPAEVCTPVIETECNDVELPIKIIVEVPFTYTVVRTVCTETIEVVPQEVCSYSYTQTEEETNAKTVEVTFEKQEKVQMVTVCQPGHHGYGGYGHGGYGHNYCKEVAQTTAYNVPVVTPIDVPVTVAYPTPVKTCVDKPIDLPVVTCADVTEERTIQVPAVEDSSVTTQKCVSGLGAPACQAVELTLPKQV
Ga0031689_1189983	Ga0031689_11899833	F027881	MSLTVARSERVRGVLTHANCTQFFLKLSGARVSNTLLTFSKFI*
Ga0031689_1191672	Ga0031689_11916721	F088751	FSC*KH*SVRLQLAARGENVLF*PQNLDIWGQKSIFCLVIAIFVDGTNDHYTRGSNFPIGTTPKKFSVSELGVIFWGSPLFLAVFGH*RVRRATTLNFGPISTKLGGIVRAIKKMTQKDNGPSPGRNYGETGVFTLGRKVVFGLKMGLTLKNHPK*HFPP*LFGQRQLFSLNNFF