Scaffold Ga0031681_1102177

Overview

Basic Information

• Taxon OID: 3300006690
• Scaffold ID: Ga0031681_1102177
• Source Dataset Name: Metatranscriptome of deep ocean microbial communities from Atlantic Ocean - MP257 (Metagenome Metatranscriptome)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 578
• Total Scaffold Genes: 1
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location

• Location Name: South Atlantic Ocean
• Coordinates
  • Lat. (^o): -3.03
  • Long. (^o): -27.33

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005505	Metagenome / Metatranscriptome	398	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0031681_11021771	F005505	N/A	DKSGSYVSWFYDAILKEVQDA*Y*VMFVFLYFFLHH*NGATVNFFFFER*NIVEMDDIRFYGVAPH*YFRPLMGLLVISPTHYEGLMWMGLWFGLLAFLPIFYNLYNSFHRYVAAIPMQNSLLQTSLFITFLMSLGCACSMLPCGRYYYEPEGGYVGNP*VKFSYQYMYLYLA*IIHHLDLIDHYIFQFSQT