3300006690: Metatranscriptome of deep ocean microbial communities from Atlantic Ocean - MP257 (Metagenome Metatranscriptome)

Overview

Basic Information

• IMG/M Taxon OID: 3300006690
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0053074 | Gp0092415 | Ga0031681
• Sample Name: Metatranscriptome of deep ocean microbial communities from Atlantic Ocean - MP257 (Metagenome Metatranscriptome)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 54700688
• Sequencing Scaffolds: 7
• Novel Protein Genes: 8
• Associated Families: 7

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	5
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea	1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Syndiniales → Amoebophryaceae → Amoebophrya → unclassified Amoebophrya → Amoebophrya sp. A25	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Deep Ocean Microbial Communities From The Global Malaspina Expedition
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → marine water body → sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: South Atlantic Ocean
• Coordinates
  • Lat. (^o): -3.03
  • Long. (^o): -27.33
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005505	Metagenome / Metatranscriptome	398	Y
F014115	Metagenome / Metatranscriptome	265	Y
F021791	Metagenome / Metatranscriptome	217	Y
F030135	Metagenome / Metatranscriptome	186	Y
F070259	Metagenome / Metatranscriptome	123	Y
F103104	Metagenome / Metatranscriptome	101	N
F103410	Metagenome / Metatranscriptome	101	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0031681_1003525	Not Available	729
Ga0031681_1004188	Not Available	667
Ga0031681_1102177	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea	578
Ga0031681_1107248	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Syndiniales → Amoebophryaceae → Amoebophrya → unclassified Amoebophrya → Amoebophrya sp. A25	591
Ga0031681_1116838	Not Available	704
Ga0031681_1124807	Not Available	737
Ga0031681_1127033	Not Available	752

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0031681_1003525	Ga0031681_10035251	F030135	EELATLSSFTDIGHATFVGCQFPDAILPGGEAIDLVAGPLN*
Ga0031681_1004188	Ga0031681_10041882	F021791	FVDYRIKPHVPPFEQIPANSVKFQSCDYTLQVGYSCVNL*
Ga0031681_1102177	Ga0031681_11021771	F005505	DKSGSYVSWFYDAILKEVQDA*Y*VMFVFLYFFLHH*NGATVNFFFFER*NIVEMDDIRFYGVAPH*YFRPLMGLLVISPTHYEGLMWMGLWFGLLAFLPIFYNLYNSFHRYVAAIPMQNSLLQTSLFITFLMSLGCACSMLPCGRYYYEPEGGYVGNP*VKFSYQYMYLYLA*IIHHLDLIDHYIFQFSQT
Ga0031681_1107248	Ga0031681_11072481	F014115	IKEFTGFEWALMMQTMENAKGTVMFCPMLAILFVGTRMRALQLTQNRGAPQGWVQDGMYMATWAVLIQFLMVLLVGLTTAGPVECDDDGTPKWEPSNKYLVWVALGLKWLTFIFLYGGIIAVITGAYTMTPQTANGRGSVPLVGDGKVPGVGVSVPGYSGLPEPVGPNDVADATGTTGNK
Ga0031681_1116838	Ga0031681_11168381	F103104	VYQFGIPSGCPSTNLVFTRTITLPKDSVVYATGHIITNQKGGRADLYLKINNGMRDYALSEDSTGQWVDLTVNHATTLKKGKYTFQITSNKNARFGCGAGWGDLDIVVVPKFKGVAAYNEPDRKSGCPASRKAFSDLILKTIKVDQTSIIKVTGHIIRTFSGRADAYLKYQRKSTLDTSLTYTNNRRWEDVKLHWTGRLGKGTHTFSIRSNRANAFGCGTAWGDLDILVLPEKL
Ga0031681_1124807	Ga0031681_11248072	F070259	MKSESLVIVNQHVTVNDLSNFAHTAHHARRVVSAGHLLGCVNLYIVG*
Ga0031681_1125107	Ga0031681_11251071	F103410	SLIASLPGPSHKSLQTRRSATTCFLAQPILAHPRASPFDALISMPAQHVLGRTPEGTSRTVLTDQIGLPKVSRPPQRRTFLHHPEASLEHASFRLPYHKTAQRLFSNTADHFCQHLRRHARVPDPGPTHRHSDDPKITFLPISLAFDRLARGPHGPGHTTPEGFACRFGCSTAPLLPGGIATTVSQPSQSTQRPLGHSTLCRTIRPESHIEGLGSRNTIHFKHSKVTRSGTFQPFPTNGWFT
Ga0031681_1127033	Ga0031681_11270332	F030135	REELATLSSFTDIWHSTFAGCQFPDAILPGKEAFDLVAGPLN*