Scaffold Ga0031687_1091912

Overview

Basic Information

• Taxon OID: 3300006688
• Scaffold ID: Ga0031687_1091912
• Source Dataset Name: Metatranscriptome of deep ocean microbial communities from South Indian Ocean - MP1089 (Metagenome Metatranscriptome)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 594
• Total Scaffold Genes: 1
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → leotiomyceta → sordariomyceta → Sordariomycetes → Sordariomycetidae → Magnaporthales → Pyriculariaceae → Pyricularia → Pyricularia oryzae (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location

• Location Name: South Indian Ocean
• Coordinates
  • Lat. (^o): -29.81
  • Long. (^o): 82.62

Associated Families

Family	Category	Number of Sequences	3D Structure?
F061786	Metagenome / Metatranscriptome	131	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0031687_10919121	F061786	N/A	YLCETIYPPEDGRSCIPPEKLEKAIKKGEIPPPSQDDEEDLDGNMDEVIDGCIREVWAYYDPKGAGALNKKQTQQFFKDALNLVALRKQCKVKDLFQGRNQSSALDAAFKKVNTSGDGRVTFEQFEEFINMCELDEAISFLTGADGEVQIDTTRVEMVDTSAIPSGGGPVKGKIEYRDYSALE*