3300006688: Metatranscriptome of deep ocean microbial communities from South Indian Ocean - MP1089 (Metagenome Metatranscriptome)

Overview

Basic Information

• IMG/M Taxon OID: 3300006688
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0053074 | Gp0092421 | Ga0031687
• Sample Name: Metatranscriptome of deep ocean microbial communities from South Indian Ocean - MP1089 (Metagenome Metatranscriptome)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 49337073
• Sequencing Scaffolds: 7
• Novel Protein Genes: 9
• Associated Families: 7

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	5
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → leotiomyceta → sordariomyceta → Sordariomycetes → Sordariomycetidae → Magnaporthales → Pyriculariaceae → Pyricularia → Pyricularia oryzae	1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Oligohymenophorea → Hymenostomatida → Tetrahymenina → Tetrahymenidae → Tetrahymena → Tetrahymena thermophila	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Deep Ocean Microbial Communities From The Global Malaspina Expedition
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → marine water body → sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: South Indian Ocean
• Coordinates
  • Lat. (^o): -29.81
  • Long. (^o): 82.62
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002654	Metagenome / Metatranscriptome	539	Y
F007073	Metagenome / Metatranscriptome	358	Y
F018908	Metagenome / Metatranscriptome	232	Y
F030135	Metagenome / Metatranscriptome	186	Y
F056539	Metagenome / Metatranscriptome	137	Y
F061786	Metagenome / Metatranscriptome	131	Y
F065812	Metagenome / Metatranscriptome	127	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0031687_1008184	Not Available	739
Ga0031687_1012807	Not Available	836
Ga0031687_1042276	Not Available	504
Ga0031687_1086326	Not Available	940
Ga0031687_1091912	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → leotiomyceta → sordariomyceta → Sordariomycetes → Sordariomycetidae → Magnaporthales → Pyriculariaceae → Pyricularia → Pyricularia oryzae	594
Ga0031687_1110357	Not Available	908
Ga0031687_1115543	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Oligohymenophorea → Hymenostomatida → Tetrahymenina → Tetrahymenidae → Tetrahymena → Tetrahymena thermophila	646

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0031687_1008184	Ga0031687_10081841	F030135	EELATLSSFADIGHSTFAGCQLPDAILPGEEAIDLVAGPLN*
Ga0031687_1012807	Ga0031687_10128071	F002654	KINIKQSDIVDKVVCQKGNSPEQVFKVPKLLLSEKEEVFFFGDYPLRKSIYNQEIGLEAAIF*
Ga0031687_1042276	Ga0031687_10422761	F018908	SEEETWYVPSMNRTDKGANPAAVMSEHNTKMEAYTQKNQHIPRWWIKGMEINSKCPRAIDCPDFRYKGEEPYSRQIKLLKSISKVVDLSKVSIGFETLGIDVQVQMQAWEDHALPWTTSPLKAHKPPTPYKNYTYYKPCTQNMTMENYHENKRCAMPLLSQQWGPKFD
Ga0031687_1080933	Ga0031687_10809331	F056539	VMKTQLILLFACLISLAAAQLALVNPVGRGFSFGDARHGPCGQSPTEVGNRIAWEQDTVHEIEVQIFGAAGGGVIVDRYSCVLNGDDENPIEPILPIEGALKVEVPDVDDQIYRLYVRTPSFRCTGDVTMQLVYATENGHEFFQCQDIVLTYSGASSLTMSVLAVIAVVLMVL*
Ga0031687_1086326	Ga0031687_10863261	F007073	ALMKLFVVLVAFCAAALALDAVGEGFAGSPDQVINPANWHGTWTANNRYGGQMYACPKGDRLYGVYSNAGFFIGRIEGRVVEGTWYEGGRGDRNDWQGAFRIELDADNQGFDGFYHRVTQDGTELRWKEERLGAPWPSNPTQDQCLVPGDEPLLGNFYNEAGQGRESAVYSLCKDEFDQIYGSFGSPDGFLEGWSVDDSTGFHGYRYDSNGRSGAYILRAVSDTVVKGFYWRGRLARQNIETSVPETLHRTSYTSRLDDCERVGPGFLRRLRGPTAAAGTLNVSMVVVALVAFAALLF*
Ga0031687_1091912	Ga0031687_10919121	F061786	YLCETIYPPEDGRSCIPPEKLEKAIKKGEIPPPSQDDEEDLDGNMDEVIDGCIREVWAYYDPKGAGALNKKQTQQFFKDALNLVALRKQCKVKDLFQGRNQSSALDAAFKKVNTSGDGRVTFEQFEEFINMCELDEAISFLTGADGEVQIDTTRVEMVDTSAIPSGGGPVKGKIEYRDYSALE*
Ga0031687_1110357	Ga0031687_11103571	F007073	SKMKVFVVLLALCVAALALDAAGEGSAGAPNQVVNPPNWHGTWTANNRYGGHMYACPKGNRLYGVYSDAGFFIGSMEGRRVEGTWYEGGRGDRNDWQGSFRIDISEDNQSFDGFYYRVTQDGYELRWHETRLGAPWPSNPTDEQCLVPGDEPLLGGFYNHPGQGNTPATYSLCKDEYDQIYGSFGSPDGFLEGWSVDSSTGFHGYRYDNNGQSGAYILRAISDSHVKGFYWRGRLARQNIATAVEENLTRTSYTASLDDCERVGPGFLRRLRGPTNSAGALTMSVAVVFVALFALLF*
Ga0031687_1113143	Ga0031687_11131431	F056539	MKVQAVLLLALLGLVSCQLALVNPEGRGFSFHDARHGPCGQSPSEPGNRIAWEQNSVREIEVQILGAAGGGVIVDRYSCVRNGDDENPIEPILPIEGALKVKVPDFDDQIYRLYVRTPSFRCTGDVTMQLVYSAENGQEFFQCQDIVLTYSGASALSMSIFAVIALALMIL*
Ga0031687_1115543	Ga0031687_11155431	F065812	MGDILPPKLNINGKPIANKYCEGKMKRTLERGLKDLKPLERKEYKLAI*