Scaffold Ga0081196_1000028

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0081196_1000028

Scaffold Ga0081196_1000028

Overview

Basic Information
Taxon OID	3300006675 Open in IMG/M
Scaffold ID	Ga0081196_1000028 Open in IMG/M
Source Dataset Name	Microbial communities of Palythoa variabilis from marine subtidal rocky reef in Praia da Pedra Rachada, Paracuru, CE, Brazil
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	UNIVERSIDADE DE SAO PAULO
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	622
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Invertebrates → Cnidaria → Unclassified → Unclassified → Marine Subtidal Rocky Reef → Zoanthid-Associated Microbial Communities From Different Locations

Source Dataset Sampling Location
Location Name	Praia da Pedra Rachada, Paracuru, CE, Brazil
Coordinates	Lat. (^o)	-3.398594	Long. (^o)	-39.014155	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F007917	Metagenome / Metatranscriptome	342	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0081196_10000282	F007917	N/A	MSKDGIVCLLMILNVNTYANVILERSLRANEGHIGVNESIMTVMKQIWTQMNVYFP*

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