Scaffold Ga0101770_1019479

Overview

Basic Information

• Taxon OID: 3300006674
• Scaffold ID: Ga0101770_1019479
• Source Dataset Name: Anaerobic microbial community collected from a biogas reactor in Fredrikstad, Norway. Combined Assembly of Gp0117115, Gp0124038
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Norwegian Sequencing Centre (NSC)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 21988
• Total Scaffold Genes: 33
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 32 (96.97%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Engineered → Bioreactor → Continuous Culture → Marine Sediment Inoculum → Unclassified → Food Waste → Mirobial Communities In Biogas Reactors

Source Dataset Sampling Location

• Location Name: Fredrikstad, Norway
• Coordinates
  • Lat. (^o): 59.185359
  • Long. (^o): 10.970104

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022008	Metagenome / Metatranscriptome	216	Y
F033769	Metagenome / Metatranscriptome	176	N
F066897	Metagenome / Metatranscriptome	126	Y
F103496	Metagenome / Metatranscriptome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0101770_101947913	F033769	GGAGG	MSTVNCGVKTATNTPSTVGVATGRKYLRLTNESLDMRCRAGASXISSXAGXXXEPGXTVEFXPLPSENREIYVMSEGKAVKLAYYEVIV*
Ga0101770_10194797	F066897	AGAAGG	MNSKAFWLIIIAVILLSAIFLWYNHTSTQETLIKAQETIEETKQALRESQEALKKIDKIAQEIKDVSQIAEKAEDEYVKXIRFVSDDEFLDRLNQYSTVMVERVKQLE*
Ga0101770_10194798	F103496	AGG	MPFNDRIRKLPLTKLIALCFTIFTCVLIVLDVTTLCPLTEKSADLLKWLGSTIIVGYFGKSAYEHKIDSTKERR*
Ga0101770_10194799	F022008	GGTGG	MTEIEALREALNDLSKQVQTLSDESRTSFGRIYDRLTKIETQMSEREHQFNRYEKTIENHEMRIRTVEGELGALRDVPERLWKVSMSNSKLTGMVAAAGGVGGLVATIITVVLKSLGE*