Scaffold Ga0079301_1011547

Overview

Basic Information

• Taxon OID: 3300006639
• Scaffold ID: Ga0079301_1011547
• Source Dataset Name: Deep subsurface shale carbon reservoir microbial communities from Ohio, USA - Utica-2 Time Series FC 2014_7_11
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3272
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (92.31%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Deep Subsurface Shale Carbon Reservoir Microbial Communities From Ohio And West Virginia, Usa

Source Dataset Sampling Location

• Location Name: USA: Ohio
• Coordinates
  • Lat. (^o): 40.178
  • Long. (^o): -81.073

Associated Families

Family	Category	Number of Sequences	3D Structure?
F040628	Metagenome	161	Y
F041160	Metagenome	160	Y
F073469	Metagenome	120	Y
F103148	Metagenome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0079301_101154710	F103148	AGGAGG	MTRKFTNKLLEAMDEGLINPQNLAQNLLGYMSERDVQRFVEAEGYFDHEEEDEEE*
Ga0079301_101154713	F041160	N/A	KNVKVIEVSQVDGKLTVVGTVGEVPFTASPFQWGSKMLMKVEAEGLDRGSRIAIGHAAKRALKVAELALPEAVLKRPRKAKVEAEPVQEVAQVEELPVGFATLDEALASLE*
Ga0079301_10115472	F073469	AGGAGG	MARSLKDVNPKHRVKRTLETIRLLRGFDRAAHFAAGGTPADWRGRSDVRPDKRKDGNRRACRGPVRDD*
Ga0079301_10115479	F040628	AGGAGG	MRHFIFLIGSTDDFESLEDLKNTYFNGNDTYRNMSVFPVSLSEVCQVAGYDTLEEIATLIGRGEAMAEGWCLDDTLSCLLEA*