Basic Information | |
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Taxon OID | 3300006639 Open in IMG/M |
Scaffold ID | Ga0079301_1011547 Open in IMG/M |
Source Dataset Name | Deep subsurface shale carbon reservoir microbial communities from Ohio, USA - Utica-2 Time Series FC 2014_7_11 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 3272 |
Total Scaffold Genes | 13 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 12 (92.31%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
Associated Families | 4 |
Taxonomy | |
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All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Deep Subsurface Shale Carbon Reservoir Microbial Communities From Ohio And West Virginia, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Ohio | |||||||
Coordinates | Lat. (o) | 40.178 | Long. (o) | -81.073 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F040628 | Metagenome | 161 | Y |
F041160 | Metagenome | 160 | Y |
F073469 | Metagenome | 120 | Y |
F103148 | Metagenome | 101 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0079301_101154710 | F103148 | AGGAGG | MTRKFTNKLLEAMDEGLINPQNLAQNLLGYMSERDVQRFVEAEGYFDHEEEDEEE* |
Ga0079301_101154713 | F041160 | N/A | KNVKVIEVSQVDGKLTVVGTVGEVPFTASPFQWGSKMLMKVEAEGLDRGSRIAIGHAAKRALKVAELALPEAVLKRPRKAKVEAEPVQEVAQVEELPVGFATLDEALASLE* |
Ga0079301_10115472 | F073469 | AGGAGG | MARSLKDVNPKHRVKRTLETIRLLRGFDRAAHFAAGGTPADWRGRSDVRPDKRKDGNRRACRGPVRDD* |
Ga0079301_10115479 | F040628 | AGGAGG | MRHFIFLIGSTDDFESLEDLKNTYFNGNDTYRNMSVFPVSLSEVCQVAGYDTLEEIATLIGRGEAMAEGWCLDDTLSCLLEA* |
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