NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome Family F103148

Metagenome Family F103148

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F103148
Family Type Metagenome
Number of Sequences 101
Average Sequence Length 54 residues
Representative Sequence MTRKFTIKLLEAMDEGLINPQNLAQNLLGYMSERDVQRFVEAEGYFDHEEEDEE
Number of Associated Samples 75
Number of Associated Scaffolds 101

Quality Assessment
Transcriptomic Evidence No
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 90.10 %
% of genes near scaffold ends (potentially truncated) 17.82 %
% of genes from short scaffolds (< 2000 bps) 80.20 %
Associated GOLD sequencing projects 71
AlphaFold2 3D model prediction Yes
3D model pTM-score0.49

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (72.277 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater
(23.762 % of family members)
Environment Ontology (ENVO) Unclassified
(59.406 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Water (non-saline)
(57.426 % of family members)



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Multiple Sequence Alignments

Select alignment to view:      


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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 45.12%    β-sheet: 0.00%    Coil/Unstructured: 54.88%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.49
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 101 Family Scaffolds
PF11753DUF3310 6.93
PF02178AT_hook 1.98
PF06745ATPase 1.98
PF06831H2TH 0.99

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 101 Family Scaffolds
COG0266Formamidopyrimidine-DNA glycosylaseReplication, recombination and repair [L] 0.99


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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
UnclassifiedrootN/A72.28 %
All OrganismsrootAll Organisms27.72 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300000756|JGI12421J11937_10146369Not Available589Open in IMG/M
3300002835|B570J40625_100411255All Organisms → Viruses → Predicted Viral1309Open in IMG/M
3300004125|Ga0066182_10135844Not Available604Open in IMG/M
3300005527|Ga0068876_10620117All Organisms → Viruses584Open in IMG/M
3300005582|Ga0049080_10043831All Organisms → cellular organisms → Bacteria1550Open in IMG/M
3300005662|Ga0078894_10119908Not Available2340Open in IMG/M
3300005662|Ga0078894_10346335All Organisms → Viruses → Predicted Viral1346Open in IMG/M
3300005662|Ga0078894_11031507Not Available706Open in IMG/M
3300005662|Ga0078894_11580184Not Available542Open in IMG/M
3300006030|Ga0075470_10195311Not Available581Open in IMG/M
3300006639|Ga0079301_1011547All Organisms → Viruses → Predicted Viral3272Open in IMG/M
3300006639|Ga0079301_1111107Not Available833Open in IMG/M
3300006641|Ga0075471_10106260All Organisms → Viruses → Predicted Viral1505Open in IMG/M
3300006863|Ga0075459_1040449Not Available784Open in IMG/M
3300006917|Ga0075472_10121186Not Available1278Open in IMG/M
3300006917|Ga0075472_10437703Not Available648Open in IMG/M
3300007363|Ga0075458_10057830All Organisms → Viruses → Predicted Viral1217Open in IMG/M
3300007363|Ga0075458_10087092Not Available975Open in IMG/M
3300007600|Ga0102920_1273481Not Available544Open in IMG/M
3300007606|Ga0102923_1122292Not Available815Open in IMG/M
3300008267|Ga0114364_1020637All Organisms → Viruses → Predicted Viral2745Open in IMG/M
3300008448|Ga0114876_1085957All Organisms → Viruses → Predicted Viral1292Open in IMG/M
3300009068|Ga0114973_10002992All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Erysipelotrichia → Erysipelotrichales → Erysipelotrichaceae → Holdemanella → Holdemanella biformis12086Open in IMG/M
3300009086|Ga0102812_10480972Not Available678Open in IMG/M
3300009159|Ga0114978_10623428Not Available621Open in IMG/M
3300009180|Ga0114979_10406653Not Available796Open in IMG/M
3300009181|Ga0114969_10130245All Organisms → Viruses → Predicted Viral1597Open in IMG/M
3300009419|Ga0114982_1005087Not Available5109Open in IMG/M
3300010354|Ga0129333_10064159All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium3419Open in IMG/M
3300010354|Ga0129333_10177636All Organisms → Viruses → Predicted Viral1944Open in IMG/M
3300010354|Ga0129333_10368593Not Available1275Open in IMG/M
3300010885|Ga0133913_10303229All Organisms → Viruses → Predicted Viral4233Open in IMG/M
3300013004|Ga0164293_10205805All Organisms → Viruses → Predicted Viral1418Open in IMG/M
3300013004|Ga0164293_10345684All Organisms → Viruses → Predicted Viral1017Open in IMG/M
3300013004|Ga0164293_10735517Not Available630Open in IMG/M
3300013005|Ga0164292_10096325All Organisms → Viruses → Predicted Viral2237Open in IMG/M
3300013005|Ga0164292_10372766Not Available959Open in IMG/M
3300013006|Ga0164294_10319294Not Available1074Open in IMG/M
3300013006|Ga0164294_10714962Not Available676Open in IMG/M
3300013006|Ga0164294_10743547Not Available661Open in IMG/M
3300013014|Ga0164295_10370540All Organisms → Viruses → Predicted Viral1087Open in IMG/M
(restricted) 3300013126|Ga0172367_10082582All Organisms → Viruses → Predicted Viral2336Open in IMG/M
(restricted) 3300013126|Ga0172367_10640891Not Available566Open in IMG/M
(restricted) 3300013131|Ga0172373_10425131Not Available823Open in IMG/M
(restricted) 3300013132|Ga0172372_10648710Not Available674Open in IMG/M
3300013372|Ga0177922_10614519Not Available809Open in IMG/M
3300017722|Ga0181347_1000272Not Available17111Open in IMG/M
3300017722|Ga0181347_1010281Not Available3035Open in IMG/M
3300017761|Ga0181356_1033410All Organisms → Viruses → Predicted Viral1836Open in IMG/M
3300017761|Ga0181356_1080572All Organisms → Viruses → Predicted Viral1082Open in IMG/M
3300017766|Ga0181343_1000874Not Available12474Open in IMG/M
3300017766|Ga0181343_1001726Not Available8568Open in IMG/M
3300017766|Ga0181343_1088485Not Available885Open in IMG/M
3300017774|Ga0181358_1205801Not Available641Open in IMG/M
3300017777|Ga0181357_1108078All Organisms → Viruses → Predicted Viral1050Open in IMG/M
3300017777|Ga0181357_1135842Not Available914Open in IMG/M
3300017780|Ga0181346_1331191Not Available509Open in IMG/M
3300017784|Ga0181348_1143215Not Available901Open in IMG/M
3300017784|Ga0181348_1250312Not Available613Open in IMG/M
3300017785|Ga0181355_1120490All Organisms → Viruses → Predicted Viral1074Open in IMG/M
3300019784|Ga0181359_1044839Not Available1710Open in IMG/M
3300019784|Ga0181359_1122787Not Available927Open in IMG/M
3300019784|Ga0181359_1172401Not Available722Open in IMG/M
3300020083|Ga0194111_10430503Not Available866Open in IMG/M
3300020550|Ga0208600_1045714Not Available662Open in IMG/M
3300020553|Ga0208855_1026001Not Available836Open in IMG/M
3300020556|Ga0208486_1030537Not Available812Open in IMG/M
3300022190|Ga0181354_1139031Not Available768Open in IMG/M
3300022752|Ga0214917_10306397Not Available703Open in IMG/M
3300023174|Ga0214921_10002198Not Available32110Open in IMG/M
3300023179|Ga0214923_10218783Not Available1104Open in IMG/M
3300024346|Ga0244775_10102140Not Available2438Open in IMG/M
3300024348|Ga0244776_10518106Not Available767Open in IMG/M
3300025585|Ga0208546_1114777Not Available595Open in IMG/M
3300025732|Ga0208784_1056401Not Available1204Open in IMG/M
3300025732|Ga0208784_1165610Not Available651Open in IMG/M
3300025872|Ga0208783_10185586Not Available867Open in IMG/M
3300025872|Ga0208783_10192388Not Available847Open in IMG/M
3300027114|Ga0208009_1000647Not Available9971Open in IMG/M
3300027710|Ga0209599_10003862Not Available5626Open in IMG/M
3300027770|Ga0209086_10040934Not Available2673Open in IMG/M
3300027797|Ga0209107_10224805Not Available914Open in IMG/M
3300028394|Ga0304730_1148626Not Available944Open in IMG/M
3300031786|Ga0315908_10904139Not Available716Open in IMG/M
3300031787|Ga0315900_10503661Not Available917Open in IMG/M
3300031857|Ga0315909_10000009All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales266498Open in IMG/M
3300031857|Ga0315909_10947654Not Available526Open in IMG/M
3300031951|Ga0315904_10203068All Organisms → Viruses → Predicted Viral1944Open in IMG/M
3300031963|Ga0315901_10828334Not Available667Open in IMG/M
3300032046|Ga0315289_11395189Not Available544Open in IMG/M
3300032050|Ga0315906_10329096All Organisms → Viruses → Predicted Viral1362Open in IMG/M
3300032173|Ga0315268_10224661Not Available1802Open in IMG/M
3300032256|Ga0315271_10801291Not Available811Open in IMG/M
3300033816|Ga0334980_0121259All Organisms → Viruses → Predicted Viral1081Open in IMG/M
3300033981|Ga0334982_0288329Not Available777Open in IMG/M
3300033993|Ga0334994_0336394Not Available753Open in IMG/M
3300033996|Ga0334979_0308831Not Available897Open in IMG/M
3300034018|Ga0334985_0418515Not Available797Open in IMG/M
3300034092|Ga0335010_0258324All Organisms → Viruses → Predicted Viral1024Open in IMG/M
3300034106|Ga0335036_0015594Not Available6182Open in IMG/M
3300034106|Ga0335036_0640496Not Available639Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).



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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
Freshwater LakeEnvironmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake23.76%
FreshwaterEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater23.76%
AqueousEnvironmental → Aquatic → Marine → Coastal → Unclassified → Aqueous11.88%
Freshwater LakeEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake6.93%
FreshwaterEnvironmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater6.93%
Deep SubsurfaceEnvironmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface4.95%
EstuarineEnvironmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine3.96%
SedimentEnvironmental → Aquatic → Freshwater → Lake → Sediment → Sediment2.97%
Freshwater To Marine Saline GradientEnvironmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient2.97%
FreshwaterEnvironmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater1.98%
FreshwaterEnvironmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater1.98%
Freshwater And SedimentEnvironmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater And Sediment1.98%
Freshwater LakeEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake1.98%
Freshwater LenticEnvironmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic0.99%
Freshwater, PlanktonEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton0.99%
FreshwaterEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater0.99%
EstuarineEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine0.99%

Visualization
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Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Taxon OIDSample NameHabitat TypeIMG/M Link
3300000756Freshwater microbial communities from dead zone in Lake Erie, Canada - CCB hypolimnion July 2011EnvironmentalOpen in IMG/M
3300002835Freshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605)EnvironmentalOpen in IMG/M
3300004125Freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MM110.SD (version 2)EnvironmentalOpen in IMG/M
3300005527Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel5S_2200h metaGEnvironmentalOpen in IMG/M
3300005582Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER15MSRFEnvironmentalOpen in IMG/M
3300005662Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.SD (version 4)EnvironmentalOpen in IMG/M
3300006030Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_0.19_D_<0.8_DNAEnvironmentalOpen in IMG/M
3300006639Deep subsurface shale carbon reservoir microbial communities from Ohio, USA - Utica-2 Time Series FC 2014_7_11EnvironmentalOpen in IMG/M
3300006641Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_0.19_D_>0.8_DNAEnvironmentalOpen in IMG/M
3300006863Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Fall_0.3_>0.8_DNAEnvironmentalOpen in IMG/M
3300006917Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_0.19_N_<0.8_DNAEnvironmentalOpen in IMG/M
3300007363Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Fall_0.3_<0.8_DNAEnvironmentalOpen in IMG/M
3300007600Estuarine microbial communities from the Columbia River estuary - metaG 1568A-3EnvironmentalOpen in IMG/M
3300007606Estuarine microbial communities from the Columbia River estuary - metaG 1569-02EnvironmentalOpen in IMG/M
3300008267Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, sample HABS-E2014-0024-100-LTREnvironmentalOpen in IMG/M
3300008448Freshwater viral communities during cyanobacterial harmful algal blooms (CHABs) in Western Lake Erie, USA - August 4, 2014 all contigsEnvironmentalOpen in IMG/M
3300009068Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140807_MF_MetaGEnvironmentalOpen in IMG/M
3300009086Estuarine microbial communities from the Columbia River estuary - Flood tide ETM metaG S.713EnvironmentalOpen in IMG/M
3300009159Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140212_EF_MetaGEnvironmentalOpen in IMG/M
3300009180Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140625_EF_MetaGEnvironmentalOpen in IMG/M
3300009181Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_MF_MetaGEnvironmentalOpen in IMG/M
3300009419Subsurface microbial communities from deep shales in Ohio, USA - Utica-3 well 1 S input2 FTEnvironmentalOpen in IMG/M
3300010354Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_0.6_0.8_DNAEnvironmentalOpen in IMG/M
3300010885northern Canada Lakes Co-assemblyEnvironmentalOpen in IMG/M
3300013004Eutrophic lake water microbial communities from Lake Mendota, Wisconsin, USA - GEODES118 metaGEnvironmentalOpen in IMG/M
3300013005Eutrophic lake water microbial communities from Lake Mendota, Wisconsin, USA - GEODES117 metaGEnvironmentalOpen in IMG/M
3300013006Oligotrophic lake water microbial communities from Sparkling Lake, Wisconsin, USA - GEODES005 metaGEnvironmentalOpen in IMG/M
3300013014Oligotrophic lake water microbial communities from Sparkling Lake, Wisconsin, USA - GEODES006 metaGEnvironmentalOpen in IMG/M
3300013126 (restricted)Freshwater microbial communities from Kabuno Bay, South-Kivu, Congo ? kab_022012_10mEnvironmentalOpen in IMG/M
3300013131 (restricted)Freshwater microbial communities from Kabuno Bay, South-Kivu, Congo ? kab_092012_10mEnvironmentalOpen in IMG/M
3300013132 (restricted)Freshwater microbial communities from Kabuno Bay, South-Kivu, Congo ? kab_092012_9.5mEnvironmentalOpen in IMG/M
3300013372Freshwater microbial communities from Lake Erie, Ontario, Canada. Combined Assembly of 10 SPsEnvironmentalOpen in IMG/M
3300017722Freshwater viral communities from Lake Michigan, USA - Su13.VD.MM110.S.NEnvironmentalOpen in IMG/M
3300017761Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM110.S.NEnvironmentalOpen in IMG/M
3300017766Freshwater viral communities from Lake Michigan, USA - Su13.VD.MLB.S.DEnvironmentalOpen in IMG/M
3300017774Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM110.S.DEnvironmentalOpen in IMG/M
3300017777Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM110.D.NEnvironmentalOpen in IMG/M
3300017780Freshwater viral communities from Lake Michigan, USA - Su13.VD.MM15.D.NEnvironmentalOpen in IMG/M
3300017784Freshwater viral communities from Lake Michigan, USA - Su13.VD.MM110.D.NEnvironmentalOpen in IMG/M
3300017785Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.D.NEnvironmentalOpen in IMG/M
3300019784Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.DEnvironmentalOpen in IMG/M
3300020083Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015033 Kigoma Deep Cast 300mEnvironmentalOpen in IMG/M
3300020550Freshwater microbial communities from Lake Mendota, WI - 08OCT2012 deep hole epilimnion (SPAdes)EnvironmentalOpen in IMG/M
3300020553Freshwater microbial communities from Lake Mendota, WI - 17MAY2012 deep hole epilimnion (SPAdes)EnvironmentalOpen in IMG/M
3300020556Freshwater microbial communities from Lake Mendota, WI - 03AUG2012 deep hole epilimnion (SPAdes)EnvironmentalOpen in IMG/M
3300022190Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.NEnvironmentalOpen in IMG/M
3300022752Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BBEnvironmentalOpen in IMG/M
3300023174Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505EnvironmentalOpen in IMG/M
3300023179Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1510EnvironmentalOpen in IMG/M
3300024346Whole water sample coassemblyEnvironmentalOpen in IMG/M
33000243480.2um to 3um size fraction coassemblyEnvironmentalOpen in IMG/M
3300025585Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_0.19_D_<0.8_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300025732Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_0.19_N_>0.8_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300025872Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_0.19_D_>0.8_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300027114Deep subsurface shale carbon reservoir microbial communities from Ohio, USA - Utica-2 Time Series FC 2014_7_16 (SPAdes)EnvironmentalOpen in IMG/M
3300027710Subsurface microbial communities from deep shales in Ohio, USA - Utica-3 well 1 S input2 FT (SPAdes)EnvironmentalOpen in IMG/M
3300027770Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130207_XF_MetaG (SPAdes)EnvironmentalOpen in IMG/M
3300027797Freshwater microbial communities from dead zone in Lake Erie, Canada - CCB hypolimnion July 2011 (SPAdes)EnvironmentalOpen in IMG/M
3300028394Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130628_MF_MetaG (v2)EnvironmentalOpen in IMG/M
3300031786Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 4 MA124EnvironmentalOpen in IMG/M
3300031787Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA114EnvironmentalOpen in IMG/M
3300031857Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA125EnvironmentalOpen in IMG/M
3300031951Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA120EnvironmentalOpen in IMG/M
3300031963Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA116EnvironmentalOpen in IMG/M
3300032046Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G11_40EnvironmentalOpen in IMG/M
3300032050Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA122EnvironmentalOpen in IMG/M
3300032173Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - C1_topEnvironmentalOpen in IMG/M
3300032256Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - C3_topEnvironmentalOpen in IMG/M
3300033816Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME16Sep2004-rr0005EnvironmentalOpen in IMG/M
3300033981Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME24Aug2014-rr0011EnvironmentalOpen in IMG/M
3300033993Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME20Jul2012-rr0037EnvironmentalOpen in IMG/M
3300033996Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME20Jul2016-rr0004EnvironmentalOpen in IMG/M
3300034018Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME04Jul2014-rr0021EnvironmentalOpen in IMG/M
3300034092Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME03Aug2012-rr0069EnvironmentalOpen in IMG/M
3300034106Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME23Aug2013-rr0131EnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID Sample Taxon ID Habitat Sequence
JGI12421J11937_1014636923300000756Freshwater And SedimentKFIEAMDEGFIDPKRLALNLMDYMSEQEVQDFAVSEGYFDCDEEEE*
B570J40625_10041125543300002835FreshwaterMTRKFTVKFLEAMDEGLIDPKQLAQNLMGYMSERDVQRFAEAEGYFDNEEEDGD*
Ga0066182_1013584423300004125Freshwater LakeMTRKFTMKFYEAMDEGLIDPKKLAQNLMGYMSESEVEDFARAEGYFDHEEEEE*
Ga0068876_1062011723300005527Freshwater LakeMTRKFTNKLLEAVDEGIIDARQLAANLLGYMSERDVEDFARAEGYFDHEEEEED*
Ga0049080_1004383143300005582Freshwater LenticMTRKFTIKFLEAMDEGLIDPKQLAQNLMGYMSERDVQRFAEAEGYFDNEEEDGD*
Ga0078894_1011990873300005662Freshwater LakeMTRKYTNKLLEAMDLGLISPRALADNLLGYMSEDDVKRFVEAEGYFDFEDAELEEEDGD*
Ga0078894_1034633553300005662Freshwater LakeMTRKFTMKFLDAMDEGWIDPKKLAQNLMGYMSEREIEDFARAEGYFEHEEEDED*
Ga0078894_1103150713300005662Freshwater LakeMTRKFTTKFIEAMDEGFIDPKRLALNLMDYMSEQEVQDFAVSEGYFDHEEEEE*
Ga0078894_1158018433300005662Freshwater LakeMTRKITNKLLEAVDEGIIDARQLAANLLGYMSERDVEDFAQAEGY
Ga0075470_1019531123300006030AqueousMTRKFTNKLIEAMDEGMINSHNLAQNLLGYMSERDVERFARAEGYFDHEEEDEEE*
Ga0079301_1011547103300006639Deep SubsurfaceMTRKFTNKLLEAMDEGLINPQNLAQNLLGYMSERDVQRFVEAEGYFDHEEEDEEE*
Ga0079301_111110723300006639Deep SubsurfaceMTRKFTMKLIRGMEEGLISPTVLAENLLGYMSEREVEDFARAEGYFAHEEEEEED*
Ga0075471_1010626023300006641AqueousMTRKFTMKLIRGMEEGLINPTRLVENLLGYMSEQDVQRFVEAEGYFDHEEEEE*
Ga0075459_104044923300006863AqueousMTRKFTIKLLEAMDEGLINPQNLAQNLLGYMSERDVQRFVEAEGYFDHEEEDEEA*
Ga0075472_1012118613300006917AqueousMTRKFTMKLIRGMEEGLIKPKDLAENLLGYMSERDVERFARAEGYFDHEEEDEEE*
Ga0075472_1043770323300006917AqueousKMTRKFTMKLIRGMEEGLINPTRLVENLLGYMSEQDVQRFVEAEGYFDHEEEEE*
Ga0075458_1005783043300007363AqueousMTRKFTMKLIRGMEEGLINPTRLVENLLGYMSEQDVQRFVEAEGYFDHEEEDEEA*
Ga0075458_1008709213300007363AqueousMTRKFTIKLLEAMDEGLINPQNLAQNLLGYMSERDVQRFVEAEGYFDHEEED*
Ga0102920_127348123300007600EstuarineMTRKFTIKFLEAMDEGLIDPKQLAQNLMGYMSERDVQRFAEAEGYFDHEEEGDG*
Ga0102923_112229213300007606EstuarineMTRKFTNKLLEALDEGMINSHNLARNLLGYMSERDVQRFVEAEGYFDHEEEDEE
Ga0114364_102063783300008267Freshwater, PlanktonMTRKFTNKLLEAMDEGMINPQNLAQNLLGYMSERDVQRFVEAEGYFDHEEEEED*
Ga0114876_108595733300008448Freshwater LakeMTRKFTNKLLEAMDEGLINPQNLAQNLLGYMSERDVQRFVEAEGYFDHEDEEEEE*
Ga0114973_10002992123300009068Freshwater LakeMTRKFTNKLLEAMDEGMINSHNLARNLLGYMSERDVQRFVEAEGYFDHEEEDEEA*
Ga0102812_1048097223300009086EstuarineMTRKFTNKLIEAMDEGLINSHNLAQNLLGYMSERDVQRFVEAEGYFDHEEEDEEA*
Ga0114978_1062342813300009159Freshwater LakeMTREFTTKFIEAMDEGRINPKVLAENLLGYMSEREVEDFAMSEGYF
Ga0114979_1040665313300009180Freshwater LakeMTRKFTNKLIEAMDEGMINPQNLAQNLLGYMSERDVQRFVEAEGYFDHEEEDEEA*
Ga0114969_1013024543300009181Freshwater LakeMTRKFTTKFIEAMDEGFIDPKRLALNLMDYMSEQEVQDFAVSEGYFDCDEEEEEA*
Ga0114982_1005087153300009419Deep SubsurfaceMTRKFTNKLLEAMDEGLINPQNLAQNLLGYMSERDVQRFVEAEGYFDHEEEEEEA*
Ga0129333_1006415913300010354Freshwater To Marine Saline GradientPEMTRKITNKLLEAVDEGIIDARQLAANLLGYMSERDVEDFARSEGYFDHEEEEEE*
Ga0129333_1017763663300010354Freshwater To Marine Saline GradientMTRKFTNKLLEAMDEGLINPQNLAQNLLGYMSERDVQRFVEAEGYFDHEEEDEEA*
Ga0129333_1036859323300010354Freshwater To Marine Saline GradientMTRKYTNKLLEAMDLGLINPRALADNLLGYMSEHDVQRFVEAEGYFDFDAELKEEDDG*
Ga0133913_10303229143300010885Freshwater LakeMTRKFTNKLLEAMDEGLINPQNLTQNLLGYMSERDVQRFVEAEGYFDHEEEDEEA*
Ga0164293_1020580553300013004FreshwaterMTRKFTNKLIEAMDEGMINPQNLAQNLLGYMSERDVQRFVEAEGYFDHEEEDED*
Ga0164293_1034568413300013004FreshwaterMTRKFTNKLIEAMDEGLINPQNLAQNLLGYMSERDVQRFVEAEGYFDHEEE
Ga0164293_1073551723300013004FreshwaterMTRKFTMKFLDAMDEGWIDPKKLAQNLMGYMSEREVEDFARAEGYFDHEEEAEEE*
Ga0164292_1009632543300013005FreshwaterMTRKFTNKLIEAMDEGMINSHNLARNLLGYMSERDVQRFVEAEGYFDHEEEDEEA*
Ga0164292_1037276613300013005FreshwaterMTRKFTNKLIEAMDEGLINPQNLAQNLLGYMSERDVQRFVEAEGYFDHEEEDED*
Ga0164294_1031929453300013006FreshwaterMTRKFTNKLIEAMDEGMINSHNLARNLLGYMSERDVQRFVEAEGYFDHEEGEEEA*
Ga0164294_1071496233300013006FreshwaterMTRKFTNKLIEAMDEGLINPQNLAQNLLGYMSERDVQRFVEAEGYFDHEEEDEEA*
Ga0164294_1074354713300013006FreshwaterMTRKFTTKFIEAMDEGFIDPKRLALNLMDYMSEQEVQDFAVSEGYFDCDEEEEE*
Ga0164295_1037054013300013014FreshwaterMTRKFTNKLLEAMDEGMINPQNLAQNLLGYMSERDVQRFVEAEGYFDHEEEDEEA*
(restricted) Ga0172367_1008258233300013126FreshwaterMSRITREFTIKFLEGMDEGTIDPKVLAQNLLGYMSEREVAEFAHREGYFEHEEEEE*
(restricted) Ga0172367_1064089113300013126FreshwaterMSRITREFTIKFLEGMDEGLIDPKVLAQNLLGYMSEREVEVFAHSEGYFEHELDEEE*
(restricted) Ga0172373_1042513113300013131FreshwaterMSRITREFTIKFLEGMDEGLIDPKVLAQNLLGYMSEREVAEFAHREGYFEHEEEEE*
(restricted) Ga0172372_1064871033300013132FreshwaterSRITREFTIKFLEGMDEGTIDPKVLAQNLLGYMSEREVAEFAHREGYFEHEEEEE*
Ga0177922_1061451913300013372FreshwaterMTRKFTTKFIEAMDEGFIDPKRLALNLMDYMSEQEVQDFAVSEGYFDCDEEEE*
Ga0181347_1000272193300017722Freshwater LakeMTRKFTMKFYEAMVEGLIDPKKLAQNLMGYMSESEVEDFARAEGYFDHEEEEE
Ga0181347_101028183300017722Freshwater LakeMTRKFTTKFIEAMDEGFIDPKRLAQNLMGYMSEQEVQDFAVSEGYFDHEEEEEEA
Ga0181356_103341033300017761Freshwater LakeMTRKFTNKFIEGMEEGLINPVILAQNLLGYMSEREVEEFAHSEGYFDHEEEDED
Ga0181356_108057233300017761Freshwater LakeMTRKFTNKLLEAMDEGMINSHNLARNLLGYMSERDVQRFVEAEGYFDHEEEEEEA
Ga0181343_1000874293300017766Freshwater LakeMTRKFTMKFLDAMDEGWIDPKKLAQNLMGYMSEREIEDFARAEGYFEHEEEDED
Ga0181343_1001726223300017766Freshwater LakeMTRKYTNKLLEAMDLGLISPRALADNLLGYMSEDDVKRFVEAEGYFDFEDAELEEEDGD
Ga0181343_108848523300017766Freshwater LakeMTRKFTIKLLEAMDEGLINPQNLAQNLLGYMSERDVQRFVEAEGYFDHEEEDEEV
Ga0181358_120580113300017774Freshwater LakeACGILTEQGGKMTRKFTMKFLDAMDEGWIDPKKLAQNLMGYMSEREVEDFARAEGYFEHEEEDED
Ga0181357_110807813300017777Freshwater LakeMTRKFTNKLLEAMDEGMINSHNLARNLLWYMSERDVQRFVEAEGYFDHEEEDEEA
Ga0181357_113584233300017777Freshwater LakeMTRKFTTKFIEAMDEGFIDPKQLAQNLMGYMSEQAVQDFAESEGYFDSEEEEA
Ga0181346_133119113300017780Freshwater LakeVTRKFTTKFIEAMDEGFIDPKRLALNLMDYMSEQEVQDFAVSEGYFDHEEEEE
Ga0181348_114321513300017784Freshwater LakeTKFIEAMDESLIDPKQLAQNLMSYMSEQAVQDFAESEGYFDSEEEEA
Ga0181348_125031223300017784Freshwater LakeMTRKFTTKFIEAMDEGFIDPKRLALNLMDYTSEQEVQDFAVSEGYFDHEEEEE
Ga0181355_112049013300017785Freshwater LakeIMTRKFTTKFIEAMDEGFIDPKRLALNLMDYMSEQEVQDFAVSEGYFDHEEEEE
Ga0181359_104483923300019784Freshwater LakeMTRKFTMKFLDAMDEGWIDPKKLAQNLMGYMSEREVEDFARAEGYFDHEEEDEEA
Ga0181359_112278723300019784Freshwater LakeMTRKFTTKFIEAMDEGFIDPKRLALNLMDYMSEQEVQDFAVSEGYFDHEEEEE
Ga0181359_117240123300019784Freshwater LakeMTRKFTMKFYEAMDEGLIDPKKLAQNLMGYMSESEVEDFARAEGYFDHEEEEE
Ga0194111_1043050343300020083Freshwater LakeMSRITREFTIKFLEGMDEGLIDPKVLAQNLLGYMSEQEVAEFAHREGYFEHEEEEE
Ga0208600_104571423300020550FreshwaterMTRKFTNKLLEAMDEGMINSHNLARNLLGYMSEREVEDFVRAEGYFDHEEEEEEA
Ga0208855_102600113300020553FreshwaterMTRKFTMKFLDAMDEGWIDPKKLAQNLMGYMSEREVEDFARAEGYFDH
Ga0208486_103053733300020556FreshwaterMTRKFTMKFLDAMDEGWIDPKKLAQNLMGYMSEREVEDFARAEGYFDHEEEEED
Ga0181354_113903123300022190Freshwater LakeMTRKFTNKLLEAMDEGMINSHNLARNLLGYMSERDVQRFVEAEGYFDHEEEDEEA
Ga0214917_1030639713300022752FreshwaterMTRKFTMKLIRGMEEGLIKPKDLVENLLGYMSERDVQQFVEAEGYFDHEEEDED
Ga0214921_10002198433300023174FreshwaterMTRKFTNKLLEAMDEGLINSHNLARNLLGYMSERDVQRFVEAEGYFDHEEEDEE
Ga0214923_1021878323300023179FreshwaterMTQSRKFTVKFIEAMEEGIIDPKLLAQNLMGYMSEREVESFARSEGYFDHEEEDAAGLPF
Ga0244775_1010214093300024346EstuarineMTRKFTNKLIEAMDEGLINSHNLAQNLLGYMSERDVQRFVEAEGYFDHEEEDEEA
Ga0244776_1051810613300024348EstuarineMTRKFTNKLLEALDEGMINSHNLARNLLGYMSERDVQRFVEAEGYFDHEEEDEEA
Ga0208546_111477723300025585AqueousMTRKFTIKLLEAMDEGLINPQNLAQNLLGYMSERDVQRFVEAEGYFDHEEEDEEA
Ga0208784_105640143300025732AqueousIKLLEAMDEGLINPQNLAQNLLGYMSERDVQRFVEAEGYFDHEEEDEEA
Ga0208784_116561013300025732AqueousMTRKFTIKLLEAMDEGLINPQNLAQNLLGYMSERDVQRFVEAEGYFDHEEEDEE
Ga0208783_1018558623300025872AqueousMTRKFTMKLIRGMEEGLINPTRLVENLLGYMSEQDVQRFVEAEGYFDHEEEEE
Ga0208783_1019238833300025872AqueousMTRKFTNKLIEAMDEGMINSHNLAQNLLGYMSERDVERFARAEGYFDHEEEDEEE
Ga0208009_100064773300027114Deep SubsurfaceMTRKFTNKLLEAMDEGLINPQNLAQNLLGYMSERDVQRFVEAEGYFDHEEEDEEE
Ga0209599_1000386283300027710Deep SubsurfaceMTRKFTNKLLEAMDEGLINPQNLAQNLLGYMSERDVQRFVEAEGYFDHEEEEEEA
Ga0209086_1004093423300027770Freshwater LakeMTRKFTTKFIEAMDEGFIDPKRLALNLMDYMSEQEVQDFAVSEGYFDCDEEEEEA
Ga0209107_1022480513300027797Freshwater And SedimentMTRKFTTKFIEAMDEGFIDPKRLALNLMDYMSEQEVQDFAVSEGYFDCDEEEE
Ga0304730_114862633300028394Freshwater LakeMTREFTTKFIEAMDEGFIDPKRLALNLMDYMSEQEVQDFAVSEGY
Ga0315908_1090413923300031786FreshwaterMTRKFTNKLLEAVDEGIIDARQLAANLLGYMSERDVEDFARSEGYFDHEEEEEE
Ga0315900_1050366143300031787FreshwaterMTRKFTNKLLEAMDEGMINPQNLAQNLLGYMSERDVQRFVEAEGYFDHEDEEEEE
Ga0315909_100000093393300031857FreshwaterMTRKFTNKLLEAMDEGLINPQNLAQNLLGYMSERDVQRFVEAEGYFDHEDEEEEE
Ga0315909_1094765413300031857FreshwaterMTRKFTNKLIEAMDEGMINPQNLAQNLLGYMSERDVERFARAEGYFDHEEEEEEA
Ga0315904_1020306813300031951FreshwaterMTRKFTNKLLEAMDEGLINPQNLAQNLLGYMSERDVQRFVEAEGYFDHE
Ga0315901_1082833423300031963FreshwaterMTRKFTVKFLEAMDEGLIDPKQLAQNLMGYMSERDVQRFAEAEGYFDHEEEDDG
Ga0315289_1139518923300032046SedimentMTRKFTNKLLEAMDEGLINPQNLAQNLLGYMSERDVQRFVEAEGYFDHEEEE
Ga0315906_1032909643300032050FreshwaterMTRKFTNKLLEAMDEGMINPQNLAQNLLGYMSERDVQRFVEAEGYFDHEEEEED
Ga0315268_1022466163300032173SedimentMTRKFTTKFIEAMDEGLIDPKQLAQNLMGYMSEQAVQDFAESEGYFDSEEE
Ga0315271_1080129123300032256SedimentMTRKFTTKFIEAMDEGLIDPKQLAQNLMGYMSEQAVQDFAESEGYFDSEEEEA
Ga0334980_0121259_390_5363300033816FreshwaterMKFLDAMDEGWIDPKKLAQNLMGYMSEREVEDFARAEGYFDHEEEDED
Ga0334982_0288329_268_4323300033981FreshwaterMTRKFTIKFLEAMDEGLIDPKQLAQNLMGYMSERDVQRFAEAEGYFDNEEEDGD
Ga0334994_0336394_515_6823300033993FreshwaterMTRKFTNKLIEAMDEGLINPQNLAQNLLGYMSERDVQRFVEAEGYFDHEEEDEEA
Ga0334979_0308831_742_8973300033996FreshwaterMTRKFTIKFLEAMDEGLIDPKQLAQNLMGYMSERDVQRFAEAEGYFDNEEED
Ga0334985_0418515_78_2393300034018FreshwaterMTRKFTTKFIEAMDEGLIDPKQLAQNLMGYMSEQEVQDFAVSEGYFDHEEEEE
Ga0335010_0258324_575_7393300034092FreshwaterMTRKFTVKFLEAMDEGLIDPKQLAQNLMGYMSERDVQRFAEAEGYFDNEEEDGD
Ga0335036_0015594_5849_60163300034106FreshwaterMTRKFTMKFLDAMDEGWIDPKKLAQNLMGYMSEREVEDFARAEGYFDHEEEAEEE
Ga0335036_0640496_437_6043300034106FreshwaterMTRKFTNKLLEAMDEGMINPQNLAQNLLGYMSERDVQRFVEAEGYFDHEEEDEEA


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