Scaffold Ga0079301_1008398

Overview

Basic Information

• Taxon OID: 3300006639
• Scaffold ID: Ga0079301_1008398
• Source Dataset Name: Deep subsurface shale carbon reservoir microbial communities from Ohio, USA - Utica-2 Time Series FC 2014_7_11
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3956
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (70.59%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Deep Subsurface Shale Carbon Reservoir Microbial Communities From Ohio And West Virginia, Usa

Source Dataset Sampling Location

• Location Name: USA: Ohio
• Coordinates
  • Lat. (^o): 40.178
  • Long. (^o): -81.073

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016800	Metagenome / Metatranscriptome	244	Y
F017818	Metagenome / Metatranscriptome	238	Y
F090316	Metagenome / Metatranscriptome	108	N
F101046	Metagenome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0079301_10083981	F090316	AGTAG	MPDDLQREEELFFKALKEYKEKKSQEPTDKTTNTLPAVIAAVL*
Ga0079301_100839811	F017818	AGGTGG	MNKDAYYDWIDENDTYPEHSHKWIVGLYNKYEGVEGLHRYFGVFETKEEAKEFAADYREKYTKPGFISSVRVFPLCEVL*
Ga0079301_10083983	F016800	AGGA	MLDAFTDYPIPSYGDVAGEKAPIRKAAILTYDRNKYCDVLVYQVDKDGDLRGTVVNFKQFYLYKNEARLDDGIPFTYEELETLPWTKISSPHSI*
Ga0079301_10083984	F101046	GAGG	MDITEYGVSLEPEELREIITGKMGFRKCPDCQGEGESWTLHYILADDLDQDNEQFKEVSAQFAADFDEDNLPPQYSFGECHLYSCETCHGVGYVPIGGY*