Scaffold Ga0079301

Basic Information
Taxon OID	3300006639 Open in IMG/M
Scaffold ID	Ga0079301_1001382 Open in IMG/M
Source Dataset Name	Deep subsurface shale carbon reservoir microbial communities from Ohio, USA - Utica-2 Time Series FC 2014_7_11
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300006639 Open in IMG/M

Scaffold ID

Ga0079301_1001382 Open in IMG/M

Source Dataset Name

Deep subsurface shale carbon reservoir microbial communities from Ohio, USA - Utica-2 Time Series FC 2014_7_11

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	11183
Total Scaffold Genes	28 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	20 (71.43%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (85.71%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

11183

Total Scaffold Genes

28 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

20 (71.43%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (85.71%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Deep Subsurface Shale Carbon Reservoir Microbial Communities From Ohio And West Virginia, Usa

Source Dataset Ecosystem

Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Deep Subsurface Shale Carbon Reservoir Microbial Communities From Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location Name	USA: Ohio
Coordinates	Lat. (^o)	40.178	Long. (^o)	-81.073	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Ohio

Coordinates

Lat. (^o)

40.178

Long. (^o)

-81.073

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005502	Metagenome / Metatranscriptome	398	N
F006891	Metagenome	362	Y
F007747	Metagenome / Metatranscriptome	345	Y
F009066	Metagenome	323	Y
F016963	Metagenome	243	N
F026867	Metagenome	196	Y
F042872	Metagenome	157	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0079301_100138215	F042872	AGGAG	VGSNPTPSDAYRYNDLCRNSNTAVITEPKKAHYQQLNLNSRGGYDLTPEAFIYHPNPAVFRMWAQQHEASK*
Ga0079301_100138217	F026867	N/A	MSLGRLNDIAIKLRQENQALSLRQLGAAYGFGYVRIKQMQALPGFPLIAGKVIPSDFDRWRLMQTAPNSLHRGDRPHSAVGKARELTSRSDSRVAWQRIASNLKAEAWLHELHAGSGSSDV*
Ga0079301_10013822	F007747	AGGAG	MNDLGKITFGKARPAPKQVLVDVTYDAKTAKALHAFGLKQLKKDQEAVIEYVIVKALKGFAKK*
Ga0079301_100138222	F009066	GGAG	VTPEHEKHLSGILRDLTRDLDAKYRKGQDEHGGALWRRPVWKDAWDEILDLCTYVHTLKMQLSVIAEIALIGAADESVVAAQSRESCRQILAVLEGFPSAADKK*
Ga0079301_100138226	F006891	AGCAG	VEVSADQVAELSERLALVRESIARIETRQSVILDLLERSQASLGEYHGRLTNMERDAHTIKTKLWLVALVSGAVVSTVWELIKRRFSL*
Ga0079301_10013826	F005502	AGGAG	MRTLLSILALLGLTTTKLSNALIDLRPIAKKIDVKKIKVRITGYWPGEDEWSSRYQSSTGTKLRAGRHCAVDPDIIPLWSKIRVMGGKREWVAVDTGTAVKSKKASGGKLPVVDVFAASEKQFNAMRLPKVAMVEVMK*
Ga0079301_10013827	F016963	GGAGG	VIEILPEQSTQEQLLNRVRSLARELAEAKAALAAAEGRENDLIDRIRSGL*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0079301_1001382

Overview

Ecosystem & Geography

Associated Families

Sequences