Scaffold Ga0075522_10000824

Overview

Basic Information

• Taxon OID: 3300006638
• Scaffold ID: Ga0075522_10000824
• Source Dataset Name: Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE PermafrostL2-A
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 22955
• Total Scaffold Genes: 32
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 21 (65.62%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil → Arctic Peat Soil Microbial Communities From The Barrow Environmental Observatory Site, Barrow, Alaska, Usa

Source Dataset Sampling Location

• Location Name: USA: Barrow Environmental Observatory site, Alaska
• Coordinates
  • Lat. (^o): 71.299
  • Long. (^o): -156.61

Associated Families

Family	Category	Number of Sequences	3D Structure?
F063097	Metagenome / Metatranscriptome	130	Y
F070252	Metagenome / Metatranscriptome	123	Y
F077836	Metagenome / Metatranscriptome	117	Y
F084395	Metagenome / Metatranscriptome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0075522_1000082412	F077836	GGCGG	MVGPADIVFVTLIAIGAVVLVGVLGYLIDKKGTQEGDQEGSKDK*
Ga0075522_1000082424	F063097	GGAG	LSVQPGKAAAGKPKVVDPANVAANLRDLTVHLHRGNAAEAKTIAAQAAEQLQEIIQADDPESVLIARAQQTMFAIEEVRIMLSQDDVNGALAAARDATKEWRIK*
Ga0075522_1000082425	F084395	N/A	MLLWRDDFSTLTLEEVLRYQLENRAWSKDLRFRSNQLVNKRLANEITQDDYLTNRKITRQEAEECQRRAAILDSQISRSGVRPLLHAS*
Ga0075522_1000082430	F070252	N/A	MKFLGSLLLMVLSFALSARCVAAQDDQDKDSYFTGTLVENAPDHLKVSRVLQGKTEAHVFKITAETKVEGGRLRLRQRINVRYITSDDGDVAILVIVRPSKAQLKKQK*